Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1866 |
Symbol | |
ID | 4278326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2206663 |
End bp | 2207820 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638134649 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_750552 |
Protein GI | 114563039 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000232808 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGAAGTA CAATTACTTT AGATAAAAAA ATCATAGATA TAATTCATTC AACCTTTGAT GGTTACGGAC TCGAAATGAA AAAGATAATC GTACTGATTG CCATAGTGCT AGCGGCACTG TCGGCTTACT ATTTACTGGC TCCTAAAGAA GCGATAGTTC AACGTCCTAG GCCAATACCT AATGTGGTGG TTGCCAAGGT GGCTATTATG CCTATTCGTG ATGAAGTCGA AGCATTAGGT ACGGGTAAAG CCTATGAGTC TATTATCGTT ACCTCTAAAG TTACTGAAAT TGTCACCAGT ATTAATTTCA ATGATGGCGA TTTAGTTAAA AAAGGCTCGT TATTAGTACA ACTCAGAAAT GACGAACATA AAGCCAAAGT AGCCGTTACC GAAATTAAGT TAGTTGAAAA CCTCCGCGAA TTAGATCGTA TCCGATCATT GGTTACCAGC AAAACGATTG CAGAATTAGA ACGCGACCGT TTACAAAGTT TAATTGATAC CACTCGTGCA GAAGTGGCTC AGGCTAAAGC TGCACTCGAA GACCGCGCAA TTAAAGCCCC ATTTCCAGGT AAATTAGGTT TGCGCCAAGT GAGTGTGGGC AGCTTAGTGA CCCCAGGTGA GCAAATTAGT ACCTTAGATG ATGTGAGTAA AATTAAATTA GATTTCTCAG TGCCAGAGCG TTTTATCCAA GAATTACAAC CCGGCAAACT CGTTGAAGCT AAAGCTGTTG CTTATCCAGA CCGGATATTT AAAGGTGTCG TTACTTCGAT TGATAGCCGC GTGAACCCAG ATACTCGAGC GGTAGTTGTG CGCGCGGTAA TGCCTAATGA TGATTATAAG CTACTGCCTG GCATGTTGAT GAAAGTGCGT CTTATTAAGC AAAGTCGCGA AGCATTACTA TTACCCGAAG CTGCAATTAT TCCTATTCAA AACAAGCATT ATGTTTATGT AGTAAATGCT GAAAATGTTG TCGAACAGCA ACAAGTTACT TTAGGCAGTC GGACACGTGG TTGGGTTGAA ATAACCGATG GGCTTAAGGT TGACCAACAA GTGATTATTC GCGGAATTTT AAAAGTTCGA CCAGGAGATA AAGTTCAAGT TGAACAAGCC GAAAACTTTA AGTTTGCTCA AGTAGAAGGT ATGGAGAAGT CAGCATGA
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Protein sequence | MRSTITLDKK IIDIIHSTFD GYGLEMKKII VLIAIVLAAL SAYYLLAPKE AIVQRPRPIP NVVVAKVAIM PIRDEVEALG TGKAYESIIV TSKVTEIVTS INFNDGDLVK KGSLLVQLRN DEHKAKVAVT EIKLVENLRE LDRIRSLVTS KTIAELERDR LQSLIDTTRA EVAQAKAALE DRAIKAPFPG KLGLRQVSVG SLVTPGEQIS TLDDVSKIKL DFSVPERFIQ ELQPGKLVEA KAVAYPDRIF KGVVTSIDSR VNPDTRAVVV RAVMPNDDYK LLPGMLMKVR LIKQSREALL LPEAAIIPIQ NKHYVYVVNA ENVVEQQQVT LGSRTRGWVE ITDGLKVDQQ VIIRGILKVR PGDKVQVEQA ENFKFAQVEG MEKSA
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