Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1833 |
Symbol | |
ID | 4278100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2164427 |
End bp | 2165320 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638134617 |
Product | inner-membrane translocator |
Protein accession | YP_750520 |
Protein GI | 114563007 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.576158 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTATG AATTATTAAT CCAACTGGTT ATCAATGGTT TAATTGTTGG CTTGCTGTAT GGCGTAGTCG GTATGTGTTT TGTACTGGTT TATAAATCCA CTCAAGTGGT TAACTTTGCC CAAGGTGAGT TTCTATTGGT TGGTGCATGG GTTTGTTGGG CAATGCTGAT TTACTTGGAA TTACCATTTA TCGTCGGCTT TTTAGCAACA ATGGTATTTA TGGCAATATT TGGTATTTTA ATCCAAATGA TTGTACTAAG GCCGATGATT GGCGAACCCA TTATTTCAGT GATTATGGTC ACCATTGGGT TATCAATATT TTTCCAAGCG TTAATGAAGT GGATATTCGG TGTGTCTGCA CAGAGTTTTC CAAAAGTATT TGAAACTGAA AATATCCAAA TTTTTGGTTT GAATATCGAA TCAGCTTACT TAATGAGCAC AGTGATAGCG TTAATTATCA TGGTCGCGTT CTTCTTATTC TTTAAATATT CCAAATATGG TTTAGCGATG CGAGCAACCG CTTTCGATCA ACAAATCGCT CAGAGTTTAG GGATATCTGT TAAGCAAGTG TTTGCTATGA GCTGGGGAAT TGCTGCAACA GTATCGGCAA CCGCAGGTAT TGTTATTGGC ATGGTAAACG GTGTTTCAAA TTCGCTAGCC GTGATGGGGG TTAAAGTGTT TCCAGCCGTG ATCCTTGGCG GACTAGATTC CATTATTGGC GCTATTGTTG GAGGTTTAAT TATTGGCGTG CTAGAGAATG TGGCAGAGTT TTTTGATAGT CAATATCTTC ATATCGGCAA CATGTATGAC ATCGCACCAT TCTATGTATT GTTAATTATT CTTTGGTTTA AACCGTACGG TTTATTCGGA ACCAAAGATA TTGAACGAAT TTAA
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Protein sequence | MNYELLIQLV INGLIVGLLY GVVGMCFVLV YKSTQVVNFA QGEFLLVGAW VCWAMLIYLE LPFIVGFLAT MVFMAIFGIL IQMIVLRPMI GEPIISVIMV TIGLSIFFQA LMKWIFGVSA QSFPKVFETE NIQIFGLNIE SAYLMSTVIA LIIMVAFFLF FKYSKYGLAM RATAFDQQIA QSLGISVKQV FAMSWGIAAT VSATAGIVIG MVNGVSNSLA VMGVKVFPAV ILGGLDSIIG AIVGGLIIGV LENVAEFFDS QYLHIGNMYD IAPFYVLLII LWFKPYGLFG TKDIERI
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