| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1829 |
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| Symbol | |
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| ID | 4278097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2156724 |
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| End bp | 2160281 |
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| Gene Length | 3558 bp |
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| Protein Length | 1185 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638134614 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_750517 |
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| Protein GI | 114563004 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCAA ATTGGCTATT GGTAAGCGTA AGTATTGGCT ATATCAGCTT ATTGTTTCTT
ATTGCCTATT TAGGTGGTAA ATATCGCCAT AAATTATTAG AAAAACAAAA TGCAATTATC
TACGCATTAT CGCTTGGTGT TTATTGCACC TCTTGGGGGT TTTTAGGCAC ATCGGCACAA
GCAGCAAATA ATTCATTTAC TTATATTTCG GTATATCTCG CACCAATATT ATTATTTATT
TTTGCATGGC CCTTTATTCA ACGCATAATA ACAACAAGTC TCAAGCTCAA GATCACTTCC
ATTGCGGACC TACTTTCTGC CCGTTTTGGT AAATCCCAAA GCTTGGCATT TGTTGTCACG
CTAGTTGCGT TAATTGGTAC TTTGCCTTAT ATAGCCTTAC AGCTAAAAGC TATTGTTTAC
TCATACAAAA TATTACAGCA AAATCAGGAT CTTAATGTTT GGCAGATTGG TCTGGTTGTG
AGTGGTATTT TGGCAGGCTT CACGATTATA TTTGGCATAA GAACCATAGA TGTTACTGAG
CGTCATCCCG GTGTAATGAT TGCTATTGCT TTTGAGTCTG TCGTTAAATT AATCGCTTTT
TTATTGGTGG GCCTCTTTGT TTCCTTCGTC ATCTATGATT CACCCATCGA CATTTGGCGA
CTATCACAAA ACAATATTTC ATTTACACAA CAATTTGATA GCAGCAGCCT GATCGGTATG
GTGGGTTTAT TAATTATCGT GATGTCTGCC TTCCTATGTT TACCAAGACA ATTTCAAGTA
ATGTTTGTTG AAATTAAGGA AAAAAAAACC AGTAATTTAG CAAGATGGTT GCTCCCCATC
TACATTATTG TTTTTGCTTT TTTTGCTGGC CCGATAGGCC TTGCAGGGAC ATTAAATTAT
GGTCAATCAA TAGATGCAGA CGCTTATGTG TTGTTTCTTC CGGCCTATAA CGGGCAAGTA
TGGCTTTCTT TATTTGCTTT TCTTGGCGCC ATTTCTGCTG CTAGCTCTAT GGTTATCGTG
TCGACAATAG CGTTAAGCAC GATGTTAAGT AACGAAATAG TATTCCCATT AATGTTCAAG
TTAGCACCAC GTAAAAATCA TGATTTTCTA CATTTTCAAT CACGCTTATT ACTGATCCGT
AAAGCCCTTG TCATTGCAGT GATCACACTC AGTTATTGTA TGTTACTACT TTCTCCTCCT
GACACATTAG CGTCATTGGG GGAAGTTGCA TTTGGGGCTA TCGCACAAAT TGGTCCAGCT
CTTTTAGCCG CTTTTTTCTG GCGAAGAGCG ACTCAAAAAG GTGTGTTATG GGGAATAGTA
AGCGGGTTTT CTATCTGGAC ATTATTGAAT TTATTACCAC AACTTGGCTT CTACCAACAT
CCTTTAGCGC ATACAGGCTG GCCTGAAACA ACCATGGTGA CACTCTTTGG CCTCTGCATT
AACATCTTAG TACTGTATAT TGTTTCACTA CTAACACGGC AAAGTATCCG TGAAGAAATG
CAGAGTAAAT TTTTTTATAA AGAAGATAAA AATCAGCTCC CTTATTTACC TAAGCAACCT
AAAGTTGATC TGCTCGAATT AGAATATCTC GTTGCACGCT TTATAGGCCA AGAAAAATCA
ACCGATTGCT TTGCACAATT TAATCAATCA CACAAAAATA AAAAACATAA AACCTACAAC
GAAGCCTTGT TATTTCATGC AGAAAACACT CTCGCCAGTG TTATGGGCTC AGCATCTGCA
AAGCTCGTTA TTTCCTTCGC TTTAGGTGGT CGCGACATAG CATTTGACCA AGTAGCCCAA
ATTGTTAAAG ACAATTCAAC ACAGCAGTTA GAATTTAGCC GTTCGGTATT ACAAGGAGCA
ATAGAGAATA CCAGTGAAGG TATATCAGTC ATTGACGGAA ATTTAAATTT AGTCGCATGG
AATAAACAAT ATCTCGACAT TTTTAATTAT CCCAAAGATC TGGTTTATAT CGGTTGCCCA
ATAAGCCAAC TTATTCGTTA TAACCTCGCT AATCAAAAAC ACTACATACT CGATATTGAA
GCCCAAGTTC AAAAACGGAT ACAATTTATA AGGGCTGGTA GTAAACATAA GTCAGAGCGA
AAACTACCAA ATGATAAAAT CATTAACATT GAGGGGAACC CAATACCTGG CGGTGGTTTT
GTGATGATTT TCTCCGATAT TACGGAGTTT CGTCAAACAG AGAATTACCT TAAAGAAGAG
AACACCGACC TTGAAAGTCG CGTATTATCA CGCACTAAAG AATTAGAGCA AGCAAACTTA
GAACTCGAAA ACGCCAACCG TGAATTAGCG CATGCGCAGC TTAAAGCAGA GCAAGCACAT
TTGAAAAAAA GTCAATATTT ACGTGCCTGT AGCCATGACT TATTGCAACC ATTATCCGCT
GCTCGACTGT TTTCATCTGC TGTATGTTTA AGTTCAAGAG TGTCCCGACA AGAACGACAG
CAAATAAAAC AAATAGACAA TTCACTCGAG ATAGCAAACA ATTTACTCTT AGACTTAAAT
GAAATAGCCC GTATCGAAAG TGGCAATATA ATCCCGGATA TTTCGATCAT CTGTGTTGAA
CAATTATTTT CTATGTTGCA GTCAGAGTTT TCAGTGCTAA CTAAAGATTA CCATATCGAT
TTTCATTGTC ATTCAAGTAA GTTATACATC AAAAGTGATT TAACGTTATT AGTAAGAATT
GTGCAAAACT TCCTAAGTAA TGCCTTTCGT TATGCTAACC ATGGCAAGGT ATTATTAGGC
TGTCGTCGTA AAGGTCAAAA TTTATGTATA CAGGTACTCG ATAATGGACC AGGAATACCT
GAAGATAAGC AACAACAAGT ATTTGAACAA TTCACTCAGT TATCAACAAA TTTGGTAGGA
CCTAAAGGCT TAGGTTTAGG ACTAAACATA GCACAAAGTT TAGCCAACAT TTTGCAGCAT
GACCTTGGAC TCATCTCAAA AGTAGGATGC GGTTGCTTAT TTAGCGTTGA AGTTCCCATT
GCCAAAGAGC CAAAAATAAT ACAAGCAAAA GCTACTCGTG CCAGTGCAAC TTTACAAGGG
GTAGGCGTAC TTTGCATTGA CAACGAGATG GATGTAATTT CGGGCATGAG TGACTTATTA
ACCGCGTGGA AATGTCGAGT TTTTACTGCC CGCACTGCTA AGCAGGCTCT TGAAATTTAT
CAGGCTCACG AAGAAGATAT CGATATATTA TTAGTAGATT ATCAATTGGT TGACGAAAAG
CAAAGTGATG ATCTGCAATA CAAAAACTCA CACAAAAGAA CCAATTTCTC AAATAATCAC
AATAAGAATA ATCGCTGTGC TAATGAAAAT AGACTCAATG GCATTGAGTT AATTGCTTGT
CTACGCGCGA AAAGTCATTA CCCACTACCT GCAATATTAA TTACTGCGAC AACAGATGAG
TCCGTATTAG TACAAGCACA ACAAGCTGAT ATTGGCTATT TAAGGAAGAT CATAAAACCA
CTCGCTTTAC GTGCTTTAAT GAGCTCATTA TTGACGAGAA AACTAGAGCA GAATTACATT
CCTAACTCAT TCAATTAG
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| Protein sequence | MFSNWLLVSV SIGYISLLFL IAYLGGKYRH KLLEKQNAII YALSLGVYCT SWGFLGTSAQ
AANNSFTYIS VYLAPILLFI FAWPFIQRII TTSLKLKITS IADLLSARFG KSQSLAFVVT
LVALIGTLPY IALQLKAIVY SYKILQQNQD LNVWQIGLVV SGILAGFTII FGIRTIDVTE
RHPGVMIAIA FESVVKLIAF LLVGLFVSFV IYDSPIDIWR LSQNNISFTQ QFDSSSLIGM
VGLLIIVMSA FLCLPRQFQV MFVEIKEKKT SNLARWLLPI YIIVFAFFAG PIGLAGTLNY
GQSIDADAYV LFLPAYNGQV WLSLFAFLGA ISAASSMVIV STIALSTMLS NEIVFPLMFK
LAPRKNHDFL HFQSRLLLIR KALVIAVITL SYCMLLLSPP DTLASLGEVA FGAIAQIGPA
LLAAFFWRRA TQKGVLWGIV SGFSIWTLLN LLPQLGFYQH PLAHTGWPET TMVTLFGLCI
NILVLYIVSL LTRQSIREEM QSKFFYKEDK NQLPYLPKQP KVDLLELEYL VARFIGQEKS
TDCFAQFNQS HKNKKHKTYN EALLFHAENT LASVMGSASA KLVISFALGG RDIAFDQVAQ
IVKDNSTQQL EFSRSVLQGA IENTSEGISV IDGNLNLVAW NKQYLDIFNY PKDLVYIGCP
ISQLIRYNLA NQKHYILDIE AQVQKRIQFI RAGSKHKSER KLPNDKIINI EGNPIPGGGF
VMIFSDITEF RQTENYLKEE NTDLESRVLS RTKELEQANL ELENANRELA HAQLKAEQAH
LKKSQYLRAC SHDLLQPLSA ARLFSSAVCL SSRVSRQERQ QIKQIDNSLE IANNLLLDLN
EIARIESGNI IPDISIICVE QLFSMLQSEF SVLTKDYHID FHCHSSKLYI KSDLTLLVRI
VQNFLSNAFR YANHGKVLLG CRRKGQNLCI QVLDNGPGIP EDKQQQVFEQ FTQLSTNLVG
PKGLGLGLNI AQSLANILQH DLGLISKVGC GCLFSVEVPI AKEPKIIQAK ATRASATLQG
VGVLCIDNEM DVISGMSDLL TAWKCRVFTA RTAKQALEIY QAHEEDIDIL LVDYQLVDEK
QSDDLQYKNS HKRTNFSNNH NKNNRCANEN RLNGIELIAC LRAKSHYPLP AILITATTDE
SVLVQAQQAD IGYLRKIIKP LALRALMSSL LTRKLEQNYI PNSFN
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