| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1809 |
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| Symbol | |
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| ID | 4277448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2133187 |
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| End bp | 2134767 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134594 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_750497 |
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| Protein GI | 114562984 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATAA ATAAGGACAA ATACAGTATA GATAATACCG ATTATACTGT TGGACAGGAT
AACATCCAAA AATGGGGCTT TGATATTCAT AACGCCGTTT TTGGGATAAG CGCAGGGTTA
ATCGCTGCTT TTTTAATTGC AATCTTAATT ATCGATCCGG CAACATCAAA AGAGTTTTTA
GATGGCTTAA AATGGCAAAT TATCGGCACA TTTGACAGTC TCTTTATGTG GTCTGCTAAT
ATTTTTGTGA TTTTTTGCTT AGCATTAATC GTTTCTCCTT TTGGTAAAAT TCGCTTAGGC
GGAGATGATG CAAAAGCTGA TTATTCAAGA CTTTCATGGA TAGCAATGCT TTTTGCTGCA
GGCATGGGTA TTGGTTTGAT GTTTTGGGGC GTTGCAGAAC CTTTAGCATA TTACACCGGT
TGGTATGAAA CACCATTGAA TGTGGTTGCT AATACACCTG AAGCTGCAGA ACTTGCACTT
GGTGCCACAA TGTTCCATTG GGGATTACAT CCTTGGTCAA TTTATGGCGT GGTAGCGCTG
TCTATGGCTT TCTTTGCTTA TAACAAAGGT TTACCACTTT CTATTCGTTC GGCTTTTTAC
CCTATATTGG GTGACCGCAC ATGGGGCTGG CCTGGACATA TCATTGATAT TTTCGCCGTA
TTAGCCACAT TATTTGGTCT AGCAACCTCA TTAGGTTTAG GTGCTCAACA AGCTGCAGCT
GGGTTCCATC ATGTGTTTGG CATTGAAGCC GGCTTAACCC TACAAATCAC TATTATTGTA
GTAGTGACGT TGTTAGCTGT TATCTCGGTA GTACGCGGCC TTGAAGGCGG CGTTAAAGTC
ATTAGTAATA TCAATATGTT ACTAGCTGTT GCTTTACTCA TTTTTGTAGC ACTTGTTACT
TTTGCTGTTT CAATGGGTAC AATTCCAACA ACGGTAATGG GTTATATAAA GAATATTATT
CCATTGAGTA ATCCAATCGG TCGTGAAGAC GAAGCTTGGA TGCACGGTTG GACTGTGTTT
TATTGGGCGT GGTGGATTTC ATGGTCACCA TTTGTGGGTA TGTTTATTGC TCGTATCTCA
CGCGGTCGTA CAGTACGTGA ATTTCTTTCC ACTGTATTGA TTGTGCCAAC CGTAGTCACT
ATTTTATGGA TGTCTGTATT TGGTGGTATC GCAATTGATC AAGTTATCAA TAATGTGGGT
ACATTGGGCA GTAAGGGATT AACTGAAGTT CCGCTAGCTA TGTTCCAAAT GTTTGATTCG
TTGCCTTTAG GTAATCTGTT ATCAATGTTG GCTGTGCTAT TGGTGCTGGT TTTCTTTATT
ACTTCTTCGG ATTCAGGCTC ACTAGTTATC GACAGTATTA CTGCTGGTGG TAAAATTGAT
GCTCCGATCC CTCAACGCAT CTTTTGGGCT GTAATAGAAG GTGCTATTGC AGCTGTATTA
CTTTGGGTTG GTGGTACTCA GGCGATTGAA GCACTTCAAG CGGGTGCTAT TTCAACTGGA
TTACCCTTTA CCATTATTCT ATTGGTTATG TGTGTCAGTT TGTTGATGGG TATGCGTACC
GAAAAGCATA ATAAAAGCTA A
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| Protein sequence | MKINKDKYSI DNTDYTVGQD NIQKWGFDIH NAVFGISAGL IAAFLIAILI IDPATSKEFL
DGLKWQIIGT FDSLFMWSAN IFVIFCLALI VSPFGKIRLG GDDAKADYSR LSWIAMLFAA
GMGIGLMFWG VAEPLAYYTG WYETPLNVVA NTPEAAELAL GATMFHWGLH PWSIYGVVAL
SMAFFAYNKG LPLSIRSAFY PILGDRTWGW PGHIIDIFAV LATLFGLATS LGLGAQQAAA
GFHHVFGIEA GLTLQITIIV VVTLLAVISV VRGLEGGVKV ISNINMLLAV ALLIFVALVT
FAVSMGTIPT TVMGYIKNII PLSNPIGRED EAWMHGWTVF YWAWWISWSP FVGMFIARIS
RGRTVREFLS TVLIVPTVVT ILWMSVFGGI AIDQVINNVG TLGSKGLTEV PLAMFQMFDS
LPLGNLLSML AVLLVLVFFI TSSDSGSLVI DSITAGGKID APIPQRIFWA VIEGAIAAVL
LWVGGTQAIE ALQAGAISTG LPFTIILLVM CVSLLMGMRT EKHNKS
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