Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1796 |
Symbol | |
ID | 4277435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2119334 |
End bp | 2119978 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638134580 |
Product | outer membrane lipoprotein carrier protein LolA |
Protein accession | YP_750484 |
Protein GI | 114562971 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000178972 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAC GTATTACAGT ATTAAGCCTA TTACTAGCCA CAAGTTTAAG CAGCGCTGCC GCAATGGCCG ATGACGCAAC CGAATTACGC GCTAAGCTAT CTAATATTGA TAGCTTACAT GCGACATTTT CCCAGCAAGT GACTGACATT AACAGTAAGC CTATTCAAAC TGGAAGCGGG GTATTTGCAC TTGCGTATCC GAATCAATTT TACTGGCATT TAACTCAGCC AGACGAATCA TTAATTGTGG CTGATGGCGC TAATTTATGG ATTTATAATC CTTTTGCGGA AGAAGTGACT GTGATGGATG TTGCTCAAGC CGTTGATGCA TCACCTATGG CTTTGTTAGT GCATCGAGAC GAAGCCACAT GGGCTAAGTA TTCGGTCACT AAGCGTGCCG TAAGCGGAAA ATCAACCTGT TTTGATATTC AACCTAAAAA ACTTAACAGC AATGTTGTAG CCGTGAGTGT GTGTTTTGAA GCTAGCCAGT TAGTTAAATT TAACTTAACT GACGAGCAAG GCAACCTAAG TCAATTTGCC TTAACTCAAC AACGTAAAGT GAAAGACAAC GAAGCAAACA TATTTAAGTT TGCCGTGCCT GATAACGTTG ATATAGACGA TCAACGTTTA AAGCAAGCTA ACTAA
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Protein sequence | MNKRITVLSL LLATSLSSAA AMADDATELR AKLSNIDSLH ATFSQQVTDI NSKPIQTGSG VFALAYPNQF YWHLTQPDES LIVADGANLW IYNPFAEEVT VMDVAQAVDA SPMALLVHRD EATWAKYSVT KRAVSGKSTC FDIQPKKLNS NVVAVSVCFE ASQLVKFNLT DEQGNLSQFA LTQQRKVKDN EANIFKFAVP DNVDIDDQRL KQAN
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