Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1742 |
Symbol | nhaB |
ID | 4277521 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2047688 |
End bp | 2049274 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134526 |
Product | sodium/proton antiporter |
Protein accession | YP_750430 |
Protein GI | 114562917 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3067] Na+/H+ antiporter |
TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGGCAA CCAAAAGTCA GGCGCTATTT GTCAACTTTT TAGGCAATTC ACCTAAATGG TACAAATACG CAATTATGGC ATTTTTAGTC ATTAATCCCC TGCTGTTTTT TTATGTCAGT CCATTTGTCG CTGGATGGGT ACTGGTAGTT GAATTTATTT TCACCCTTGC CATGGCACTT AAATGTTATC CACTTCAGCC CGGCGGTTTG CTCGCAATTC AAGCCGTATT TATTGGCATG ACATCCCCCT CACAAGTTCT ACATGAAATT GAAGCCAACC TGGAAGTATT GTTACTTTTA GTCTTCATGG TCGCCGGTAT TTACTTTATG AAACAGTTAT TACTGTTTGT ATTTACCAAG ATGATTACTA AAGTGCGTTC AAAAATCATT GTTTCGTTGA TGTTCTGTAC TGCGTCGGCA TTCTTATCTG CGTTCTTAGA TGCGTTAACA GTCATCGCGG TTATCATTGC TGTTGCCGTT GGTTTTTACT CCATTTACCA CAAGGTCGCT TCAGGTAAGA GCTTTAACGA TGGCCATGAC CATACATCTG AAACAACTGA ACAGTTAAAC AATGAAGAAT TAGAAGCATT TCGTGCATTC TTACGTAATT TATTAATGCA TTCAGGTATT GGTACCGCTC TTGGTGGTGT CTGTACTATG GTGGGCGAAC CACAGAACTT GATCATTGCG GCACAAGCCC ACTGGCAGTT TGGTGAGTTT TTCTTACGGA TGTCACCGGT GACTATGCCG GTATTGGTTG CAGGAATATT CACTTGTTTT CTTGTCGAAA AATTCAAAGT ATTTGGTTAT GGCGCGCAAT TACCTGGTGC AGTACATAAG ATTTTAACCG ATTACGCTAA TCATGAAGAC TCACACAGAA CCAACCAAGA TAAAATGAAA CTGGTTGTCC AGGCTCTTAT TGGAGTTTGG TTAATTGCAG GTTTAGCACT TCACCTAGCT TCTGTGGGCC TCATTGGTTT ATCGGTCATT ATTTTAGCAA CAGCATTTAA TGGCATAACC GACGAACATT CTTTGGGTAA AGCGTTTGAA GAAGCCTTGC CTTTCACTGC GCTTTTAGCG GTATTTTTTG CCATCGTTGG TGTGATCATT GACCAGGAAC TGTTTGCTCC AGTGATCCAA TGGGCATTAG GTTATGAAGG CAATATGCAG TTAGTGATTT TTTACATCGC TAACGGCTTA TTATCTATGG TCAGTGACAA CGTGTTTGTG GGCACGGTTT ACATTAATGA AGTGAAAGCT GCATTGATGA GTGGCCAAAT CACTCGAGAT CAATTTGACT TACTTGCTGT GGCAATTAAC ACCGGTACTA ACCTACCTTC TGTGGCTACA CCGAATGGAC AAGCAGCGTT CTTATTCTTG TTAACCTCAG CCATAGCACC GCTTATTCGC TTGTCATACG GCCGTATGGT ATGGATGGCG TTGCCTTATA CGATTGTATT ATCGATTGTG GGTGTAATGG CCATTGAGTC TGGTTTCTTA GTCGACATGA CTGATGTTCT TTATGAAACT CAATTAATAA TCCACCACTC TGCCAAAGAC ATCAGCGGTG CGGTAATGGG TCATTAA
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Protein sequence | MQATKSQALF VNFLGNSPKW YKYAIMAFLV INPLLFFYVS PFVAGWVLVV EFIFTLAMAL KCYPLQPGGL LAIQAVFIGM TSPSQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFVFTK MITKVRSKII VSLMFCTASA FLSAFLDALT VIAVIIAVAV GFYSIYHKVA SGKSFNDGHD HTSETTEQLN NEELEAFRAF LRNLLMHSGI GTALGGVCTM VGEPQNLIIA AQAHWQFGEF FLRMSPVTMP VLVAGIFTCF LVEKFKVFGY GAQLPGAVHK ILTDYANHED SHRTNQDKMK LVVQALIGVW LIAGLALHLA SVGLIGLSVI ILATAFNGIT DEHSLGKAFE EALPFTALLA VFFAIVGVII DQELFAPVIQ WALGYEGNMQ LVIFYIANGL LSMVSDNVFV GTVYINEVKA ALMSGQITRD QFDLLAVAIN TGTNLPSVAT PNGQAAFLFL LTSAIAPLIR LSYGRMVWMA LPYTIVLSIV GVMAIESGFL VDMTDVLYET QLIIHHSAKD ISGAVMGH
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