| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1625 |
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| Symbol | |
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| ID | 4277284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1934361 |
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| End bp | 1936529 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134410 |
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| Product | vault protein inter-alpha-trypsin subunit |
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| Protein accession | YP_750314 |
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| Protein GI | 114562801 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2425] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.466384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCCGT TGTTTTTAAT CTCACATTTG TCTATTAAAA ATGTTTGTAA ATCGCTGTGT
TTTGGTTTGT TGTTTGTCAT TTATGCCAGT ATTACAACGG CATTTGCATC ACCGTCTGGA
TATCAAGAAG ACGATATCAC TCAAGGCACA TTAGAGTACT TTCAACAAAA TCAAGTGATA
CAAGCTTTTG CGCTAGATAC ACAAGTGAGC ATGGATGTGT CGGGATTACT CAATCGGGTC
ACTGTTAAGC AAGTGTTTAT CAATGATTCT GATCAATGGG TGAATGGGCG ATACTTATTC
CCGTTACCTG AAAATGCAGC GGTCGATAGC ATGCAGTTAC GCATTGGCGA CAAAGTCATA
GCAGGACAAA TTCAACCTAA AAAACAAGCA TTACAGACTT TTGAAAACGC CAAAAAACAA
GGTAAACAAG CGAGTTTGTT ACAGCAACAA CGACGCAATT TGTTTACCTC AGATGTGGCC
AATTTAGGGC CACACGAACA ACTCGTGGTC GAAATTAGTT ATCAACAAAA GGTTGAGTAT
CGTGATGGGC TGTTTAGTTT ACGTTTTCCA TTAGCGATAA CACCGCGTTA TAACCCGCAA
GCTGATCGCA CTACCGAGCA GCCGCTATTG GCCATGCCAT CGAGCGCTAA TACGGCGACG
TCTGCTAAAC ACGTCAGGCC TGCACTAGAT GTAAAGATGC AGGTGAACAT TGATGCTGGT
TTTGAACTAA CCTCGTTAGA CAGTCTCTAT CATCCGATTA AGCAATCTAA TGTAGGTAAT
CATTACAGTG TGAACTTTGC CGGCAAACAA ATTGCCGACC GTGATTTTGT ATTGCAATGG
CAGGCTAATG TAGGCGCAGT ACCAAAAGCA GCGACGTTTT ATCAAACCGG TAAAACTCAT
TTAGCAGACA ATAGCGACGA GCGTTCAGAA ACAGCACAAA GACAACCTAA TCCGGTTGAT
AACAATATGT ACTCGCTAGT GATGTTAATG CCGCCGAGTG TGGAAGTAAG CGAGCAACAC
CTTATTGCCA GAGAACTGAT TTTAGTTATC GATACGTCTG GTTCTATGTC TGGCCAGTCT
ATTACTCAAG CTAAGCAAGC ATTACAGTTT GCACTAGCGG GACTGCGTGA CATCGACAGC
TTTAATATTA TTGAATTTAA TAGTGACGTA ACAATGTTAT CTGCCACGCC ATTGTCTGCT
AATAGCCGTA ATATTGGCAA AGCAAACCGA TTTATCCAGT CATTAGACGC TGACGGCGGC
ACCGAAATGC GCAGTGCATT ACAAACTGCG CTGGTGGACA GCGTACAGCA AGATTCTGAT
CAAACCGATG CCCACAGTGA AATGCTACGC CAAGTGATTT TTATGACCGA CGGTGCCGTT
GGCAATGAAC ATGAGTTGTA TCAGCTTATT AACGATCAGT TAGGTGACAG CCGATTATTT
ACGGTTGGTA TTGGCTCTGC GCCGAACTCA GATTTTATGC GCCGAGCAGC AACAATGGGG
CGAGGGACAT TTACCTATAT TGGCAATGAG TCTGAAGTGC AACAAAAAAT TGAACAATTA
CTTAATAAAA TAGAGCAACC CGTGCTGACC AATATTGGCT TGTATTATCT TGATGGCAGC
GTACCAGATT ATTGGCCGAC CACCATTAGT GATTTATACC AAAATGAACC CCTTTGGGTA
AGCATTAAAT CGGCGTCACA CCAACAACAG CCTATCATAG TGTCTGGCAG CATTAATGGT
CAGTATTGGC AGCAACAACT TGATTTTGAA GAAAACCAAG CAGCTAAAGG CATTGATTTA
TTATGGGCAA ATGCGCAAAT AACATCACTT GAGCTTTATA AAGACAATGC CAGCCGCGAC
CGCGTTAATA AGCAAGTTGA AGCATTAGGC TTGCTGTATC ACTTAGTGAC CAGCCAGACC
AGTTTAGTTG CTGTTGATGT GACTCCGGTT AACCCATTGG TTGATAATCC AATAGATGTG
CAGTTACAAC CGCATATGCC CCATGGATTA AATGCAGCTC AATCGTCGCA AGTATTACCA
CAAACCGGTA CCGCTAGTCG ATTATGGTTA TTAATTGGCT TTAGTTTATT AGGCTTAGGA
TTGTTGCACT ATTTATGGTT AAGACAACGC TTACCAGGCC AATTGTTAGT GATTGAATCA
CATGATTAA
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| Protein sequence | MRPLFLISHL SIKNVCKSLC FGLLFVIYAS ITTAFASPSG YQEDDITQGT LEYFQQNQVI
QAFALDTQVS MDVSGLLNRV TVKQVFINDS DQWVNGRYLF PLPENAAVDS MQLRIGDKVI
AGQIQPKKQA LQTFENAKKQ GKQASLLQQQ RRNLFTSDVA NLGPHEQLVV EISYQQKVEY
RDGLFSLRFP LAITPRYNPQ ADRTTEQPLL AMPSSANTAT SAKHVRPALD VKMQVNIDAG
FELTSLDSLY HPIKQSNVGN HYSVNFAGKQ IADRDFVLQW QANVGAVPKA ATFYQTGKTH
LADNSDERSE TAQRQPNPVD NNMYSLVMLM PPSVEVSEQH LIARELILVI DTSGSMSGQS
ITQAKQALQF ALAGLRDIDS FNIIEFNSDV TMLSATPLSA NSRNIGKANR FIQSLDADGG
TEMRSALQTA LVDSVQQDSD QTDAHSEMLR QVIFMTDGAV GNEHELYQLI NDQLGDSRLF
TVGIGSAPNS DFMRRAATMG RGTFTYIGNE SEVQQKIEQL LNKIEQPVLT NIGLYYLDGS
VPDYWPTTIS DLYQNEPLWV SIKSASHQQQ PIIVSGSING QYWQQQLDFE ENQAAKGIDL
LWANAQITSL ELYKDNASRD RVNKQVEALG LLYHLVTSQT SLVAVDVTPV NPLVDNPIDV
QLQPHMPHGL NAAQSSQVLP QTGTASRLWL LIGFSLLGLG LLHYLWLRQR LPGQLLVIES
HD
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