| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1492 |
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| Symbol | |
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| ID | 4278058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1783808 |
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| End bp | 1784461 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134272 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_750181 |
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| Protein GI | 114562668 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.210059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATTGA ACATTAAAGA TAAAGCTTAT GAACTGGTCA TTTTCGATTG GGATGGCACC
CTAATGGATA CCGTAGGTAA AATAGTGTCT TGTATGCAAC ATGTAGCACA AGAATTAATT
TTACCTATAC CCACTGAGCA ACAAATTAGA GATGTCATCG GTTTATCTTT ACCTAAAATC
ATGCCGATTT TATTTGCTGG TCATCAAAAC CATCAACAGA TTATTGATTG CTATCGACGT
CATCATGTTG CCAATGAGCA ACCTACACCT CTTTTTGAGG GTGTAGAGTC GCTCATTAGT
AATCTACATG CGGCTGGTTA TCAATTAGCT GTTGCGACCG GTAAAGGACG AGATGGCCTA
GATAAGGTAT TAGCATTAAC AGGCTTAGGG CAGTATTTTC ATGCCACACG TTGTGCAGAT
GACGCTAAAA GTAAACCGCA CCCTGAGATG CTGCATTCAT TATTGAGTCA TTTTAATGTC
GCTGCCGACA GAGCTATTAT GATTGGAGAT TCCATTCATG ATTTAACGAT GGCCAATAAT
GCTGGTATGG CGAGTATTGG TGTGAGTTAT GGTGCGCATA ATGAAGTTAG ATTGAAAACG
TTAAACCCAC ATGCGATTGT CGACCAGCCT CTGGCGATAC ATGACTACCT TTAA
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| Protein sequence | MILNIKDKAY ELVIFDWDGT LMDTVGKIVS CMQHVAQELI LPIPTEQQIR DVIGLSLPKI
MPILFAGHQN HQQIIDCYRR HHVANEQPTP LFEGVESLIS NLHAAGYQLA VATGKGRDGL
DKVLALTGLG QYFHATRCAD DAKSKPHPEM LHSLLSHFNV AADRAIMIGD SIHDLTMANN
AGMASIGVSY GAHNEVRLKT LNPHAIVDQP LAIHDYL
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