| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1491 |
|---|
| Symbol | |
|---|
| ID | 4278057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1782820 |
|---|
| End bp | 1783776 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638134271 |
|---|
| Product | pseudouridine synthase, RluA family protein |
|---|
| Protein accession | YP_750180 |
|---|
| Protein GI | 114562667 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.446351 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTG AAACTACCCC CCAAGTTGAA TACGTGACTA TCGACGAAGA TCATTTTGAA
CAACGAATCG ATAATTTTTT GCTAACTAAA TTAAAAGGTG TTCCTAAAAG CATGATCTAT
CGGATTGTGC GCAAAGGGGA AGTGCGGGTA AATAAAAAAC GCATCAAGCC TGAATACAAA
TTACAAATTG GTGACATCGT AAGGGTACCG CCTGTTCGTG TTGCCGAAAA AGACAATCGT
AAGGCACCAT CTCCTAATTT ATCCAGAGTG TCACAGCTTG AAGATCGTAT TATCCATGAA
GATAATCATC TTATTGTGTT AAACAAGCCT GCTGGTATTG CTGTACACGG TGGCAGCGGT
GTTGATTATG GTGTGATTGA AGGATTACGT TCACTGCGAC CACAGCAAAA ATTTTTAGAG
TTAGTACATC GATTAGATAA AGATACTTCC GGTGTACTGC TTGTGGCTAA GAAGCGTAGT
GCGCTAAAGC ATTTACATGA GCAATTACGC AGCAAAACCA TGCAAAAAGA TTATTTAGCC
TTGGTGCGTG GTGAATGGCA GGCAAGTGAT AAAGTGGTTA AAGCACCGCT ATTAAAAATT
ACCTTAAAGT CGGGCGAGCG AATCGTGCGG GTTAATAAAG AGGGTAAAGA ATCTGAAACT
CGCTATAAGA TCATGCAACG TTATCAAGGC TGTACTTTAG TGAAGGCGAG TCCTGTTACA
GGGCGAACCC ATCAAATACG AGTACATTGT CAGTATGCTG GCCATGCAAT TGCTTGCGAT
GATAAATACA GCGAACAGCA ATTTGACGAT AGCATGCGTG CTTTAGGGTT AGACCGTTTA
TTTTTACATG CGGCTGAACT TAAATTCACT CATCCAGAAA ATGATGAAAT CATGCAAGTT
AAAGCGCCTC TAGACCCTGT GTTATTGAGT ACTCTTGATA AATTGAAAAG AGTATAA
|
|---|
| Protein sequence | MNTETTPQVE YVTIDEDHFE QRIDNFLLTK LKGVPKSMIY RIVRKGEVRV NKKRIKPEYK
LQIGDIVRVP PVRVAEKDNR KAPSPNLSRV SQLEDRIIHE DNHLIVLNKP AGIAVHGGSG
VDYGVIEGLR SLRPQQKFLE LVHRLDKDTS GVLLVAKKRS ALKHLHEQLR SKTMQKDYLA
LVRGEWQASD KVVKAPLLKI TLKSGERIVR VNKEGKESET RYKIMQRYQG CTLVKASPVT
GRTHQIRVHC QYAGHAIACD DKYSEQQFDD SMRALGLDRL FLHAAELKFT HPENDEIMQV
KAPLDPVLLS TLDKLKRV
|
|---|
| |