| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1484 |
|---|
| Symbol | |
|---|
| ID | 4278051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1772930 |
|---|
| End bp | 1773778 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134265 |
|---|
| Product | DNA ligase |
|---|
| Protein accession | YP_750174 |
|---|
| Protein GI | 114562661 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.159526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGC TACCGTATCT TTTTATTTTG GTCATTATTT CACTGCATTG TTTTACGATA
AAGAGTGAAG TGTTATCAAT ACCTCCTATT CAGTTGGCAA CAAAATATCA ACAAGATATA
GATGTCACTG AATACTTAGT CAGCGAGAAG CTTGATGGTG TTCGAGGCTA CTGGGATGGC
AGTAACATGC TGACTCGCAG TGGACGAAAA GTGGCATTAC CTTCATCGTT TACACTGGGT
TTTCCTCATA CAGCTATTGA CGGTGAACTT TGGTTGGGGC GTAATCGATT CGAAGATATT
TCAGCATTGG TTCGACGCAA GCAAGTACCC GATAAAGAGT GGCAGGAAGT TAAGTTTATG
ATGTTTGATT TACCGCGGCA TTCAGGCCCT TTTATTGAAC GCTACTTAGC GATGAAAATG
TTGGCAGAAC AAACGGCCTC CATACATTTA CAGGTCATTA AGCAGGAGCC GGTGGCTTCA
ACTGAAGCTC TGTTTACATT GCTTGATTCC ATCGTTAATG CTGGTGGTGA AGGATTGATG
TTACATTATC AGCAAGCGCA TTATGCAGTC GGCCGCAGTG AGTATATTGT TAAGCTCAAA
CCCAAATATG ACGCTGAAGC TGTAGTGATT GGTCATACAG AAGGTAAGGG TAAGTATCGA
GGTAAACTAG GTGCGTTAAT TGTAAAAACA CCTGCGGGGG TAGTGTTTAA TATCGGCAGT
GGTTTAAGCG ATAAACAACG AGAAAATCCA CCTTTAGTCG GTTCTACCAT TACTTATCAA
TATTTAGGCT TAACTCAAAA AGGGACGCCA AGATTTGCTA CTTTTCTGCG ACAAAGACCA
CCGCAATAA
|
|---|
| Protein sequence | MRKLPYLFIL VIISLHCFTI KSEVLSIPPI QLATKYQQDI DVTEYLVSEK LDGVRGYWDG
SNMLTRSGRK VALPSSFTLG FPHTAIDGEL WLGRNRFEDI SALVRRKQVP DKEWQEVKFM
MFDLPRHSGP FIERYLAMKM LAEQTASIHL QVIKQEPVAS TEALFTLLDS IVNAGGEGLM
LHYQQAHYAV GRSEYIVKLK PKYDAEAVVI GHTEGKGKYR GKLGALIVKT PAGVVFNIGS
GLSDKQRENP PLVGSTITYQ YLGLTQKGTP RFATFLRQRP PQ
|
|---|
| |