| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1462 |
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| Symbol | tolB |
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| ID | 4278466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1746083 |
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| End bp | 1747411 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134237 |
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| Product | translocation protein TolB |
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| Protein accession | YP_750152 |
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| Protein GI | 114562639 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000134108 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATT TGGCTAAATG GCTAACACTG GTATTAATAG TGTTAACTAC ACCCGCTCGC
GCAGCGTTAG ATATTGTTAT TACAGAAGGG GTTGATGCAG CAAGACCAAT TGCTGTAGTA
CCTTTTGTAT GGCAAGGGCA AGGTCCCGCT CCTGCATCTA TTTCTGATGT GGTAGCATCT
GATTTATCTC GCAGTGGTAC ATTTAAGACA CTTGATGTTC GTGCATTGCC ACAATCAACT
ATTTCGTCTG TAAATGGTTT TACTGCTCAA AACTGGGCTA ATGTAGAAGC TGAAGCGCTT
GTAGTTGGTA CGGTTAAGCC ATATGGAGCA GATCAATACC TAGTGAGTTT TGAGCTGATT
GATTTAGTCA AAGCACAACT GCAAGCGGGT AAAGGGCCTC AGAATAACAA TGAGTTATTA
CTTGAAAGCC GTGAAACGGT TATTAGTGCA AACCAATTTA GACAGTATAG CCATCGTATC
AGTGATATTG TTTATGAAAA GCTCACCGGT ATTCGTGGTG CATTTTTAAC CCGTATCGCA
TATGTTGTGG TTAAACAAGG TCAAAAAGCA CCTTACCATC TAATGATTGC GGATTACGAC
GGCTACAATG AACAAATGCT ACTACGTTCA CCAGAGCCCT TGATGTCACC AACTTGGTCT
CCTGATGGGC GTCGTTTAGC CTATGTTAGT TTTGAAAATA GAAAAGCTGA AATCTTTGTT
CAAGACATTT ACAGCCAAAC TCGTACATTA GTGAGTAGTT TTGACGGTAT TAATGGTGCA
CCGGCTTTTT CTCCTGATGG GAAAAAATTA GCTGTTACAC TGTCAAAAGA TGGCCAACCA
GAAATTTATG TCGTCGATAT TGCCACTAAA GCAACTCGAC GTATTACAGA GCATTACGCA
ATTGATACAG AACCATCTTG GTTCCCAGAC GGTAAATCAA TTTTATTTAC CTCTGAACGT
GGTGGGAAAC CACAGTTATA TCGCGTAAGT TTAGATACAA ATAAAGTCTC GCGTATGACT
TTTGAAGGTG AATGGAACCT CGGCGGTTCA ATTAGCCCAG ATGGTCGTAG TATGATTTTT
GTAAACCGTA CTAACGGTAA ATTCCATATT GCTAGAATGG ATCTTGCAAC ACGCTTTATG
CAGGTGCTTT CATCAACTCA ACTTGATGAA TCACCAAGTG TTGCTCCAAA TGGCACTATG
GTTATCTACG GTACAACCCA TCAAGGTAAA CAAGTGTTAG CTGCTGTTTC TATGGACGGC
AGATTTAAAG CAAGATTGCC TGTCGGCCAG GGCGAGGTGA AGTCACCCGC ATGGTCTCCG
TTTCTCTAA
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| Protein sequence | MNNLAKWLTL VLIVLTTPAR AALDIVITEG VDAARPIAVV PFVWQGQGPA PASISDVVAS
DLSRSGTFKT LDVRALPQST ISSVNGFTAQ NWANVEAEAL VVGTVKPYGA DQYLVSFELI
DLVKAQLQAG KGPQNNNELL LESRETVISA NQFRQYSHRI SDIVYEKLTG IRGAFLTRIA
YVVVKQGQKA PYHLMIADYD GYNEQMLLRS PEPLMSPTWS PDGRRLAYVS FENRKAEIFV
QDIYSQTRTL VSSFDGINGA PAFSPDGKKL AVTLSKDGQP EIYVVDIATK ATRRITEHYA
IDTEPSWFPD GKSILFTSER GGKPQLYRVS LDTNKVSRMT FEGEWNLGGS ISPDGRSMIF
VNRTNGKFHI ARMDLATRFM QVLSSTQLDE SPSVAPNGTM VIYGTTHQGK QVLAAVSMDG
RFKARLPVGQ GEVKSPAWSP FL
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