Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1447 |
Symbol | |
ID | 4278451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1727270 |
End bp | 1731145 |
Gene Length | 3876 bp |
Protein Length | 1291 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134222 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_750137 |
Protein GI | 114562624 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.236687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAATTCGG ACCTTCACCC GCTATCTAAG GCGTATCTCA ATCTTTGTTA TCAAACCGAT GCTGCTAAAA TTCGTCGTCG TTTGTATCGT GTCAATAAAG AAGCCGAGTC TGAAAAAAAA TCCCAAACGT TAGCTCAGTT AACTGAAGCT GCGCAGCAAG CCTATCAAAA AGCGCAACAG CGCTTGCAGT CTAGACCTAT TATCAGTTAT CCAGATGAAC TGCCTGTGTC GCAAAAACGT GACGATATAG CCTCTGCTAT TGCCAATAAT CAAGTGGTGA TTGTGGCGGG GGAGACTGGG TCTGGTAAAA CCACTCAGTT ACCTAAAATC TGTCTTGAAT TGGGATTAGG AACGAGAGGC TTAATTGGCC ATACTCAGCC TCGTCGTCTT GCTGCTCGAA GTGTTGCGAA CCGTATTGCT GATGAACTTA ACAGCCCATT AGGCGAAGTT GTTGGCTTTA AAGTTCGTTT TGCTGATGCC ATGAGCGACA ACAGTTACAT TAAACTGATG ACCGACGGTA TTTTGCTCGC CGAACTCACC TCAGATCGAT TTCTCAACCA GTATGATGCG ATTATTATTG ATGAAGCGCA TGAGCGCAGC TTAAACATTG ATTTTATATT GGGATATCTG AAGCAGGTAT TAAAGAAACG TCCTGATTTA AAAGTTATTA TTACTTCAGC TACCATTGAT GTAGATCGCT TTTCAAAACA CTTTAATAAC GCACCTGTTA TTGAAGTGTC TGGGCGTACT TTTGAAGTTG AAACGCGTTA TCGTCCTTTA GTTCGCGACA CTGATGCTGA TTTAGATGTC AGCGATGGTA TTTTTGCTGC CGTAGAAGAG TTAATGGCCG CTGGCCCTGG CGACATATTG ATATTTATGA ATGGTGAGCG CGAAATTCGC GATACCGCAG ATTTACTCAA TAAACAGCAA TATCGCGATA CTGAAGTTTT ACCACTATAC GCGCGTCTTT CTTATGGTGA ACAATCTAAA GTCTTTAAAA GCCACATTGG CCGCCGTATC GTATTAGCCA CCAACGTTGC CGAAACGTCA TTAACCGTAC CTGGGATCCG TTATGTTATC GATCCTGGTA CTGCTCGAAT AAGCCGTTAT AGTTACCGCA CGAAAGTACA ACGTTTACCG ATAGAACCTA TTTCGCAAGC CAGTGCCAAT CAGCGTCAAG GACGTTGTGG TCGTGTAGGA CCGGGTATTT GTATTCGACT TTACGATGAA ATGGATTTTA TTCAGCGTCC CGAATTTACC GATCCTGAAA TATTACGAAC CAATCTTGCT TCAGTGATAT TACACATGCT CGCGATTGGA TTAGGTGACA TTGGCGGATT TCCATTTATT CAACCACCGG ACCAAAAGCA CATTCGTGAC GGTTTTTTAT TGCTTGAAGA GTTACAAGCG GTTAAAAAAT CGGGACATGA TCTAGTGTTA ACGCCATTAG GCAAAGACTT AGCCAAAATC CCACTCGATC CGCGCTTGGC CCGAATGGTC ATTGAAGCGA ATAAATTGGG TTGTTTACAC GAAGCGTTAG TGATAACTGC AGGTTTGTCG ATTCAAGATC CGCGTGAACG TCCAGCGGAA AAGAAACAAG CAGCAGACGA GTGTCATCGC CGTTATGCTG ATAAAGATTC AGACTTTGCC AGCTGGGTAA AGTTATGGGA TCACGTAAAA GATCAAAAGC ATGAGCTATC AGCCAGTCAG TTTAGAAAAC AATGTCGTGA CGAATATCTC GCGTATTTAC GCGTACGTGA ATGGCAAGAT TTATACACTC AAGTGAAACA AGCCGTCCAT GAATTGAAAT GGCGTATTAA TGACAGTGCA GCCAGTTACG AACAGTTACA TAGAGCATTA TTATCAGGCT TGTTAAGTCA TGTTGGTTTT AAAGGCGAGA ACAACGAGTA TCTAGGGGCG CGTAACCGTA AATTCTTTGT GTTTCCGGGA TCGCCTTTAG CGAAAAAGGG GCCTAAGTGG ATAATGGCTG CTGAGCTGAC TGAAACCTCA CGTTTATTTG CGCGTTGTTG TGCCAAAATA GACCCTGAAT GGTTAGAGTC ACTCGCCTCA CATTTAGTGA AAAAGAATTA TCTAGAACCG CATTTTGAAG CCAAAGCGGC AAGCGTTATA GCACTTGAGA ACCAAGTTCT TTATGGCTTG ACCATAGTCA ATCGCCGTCG AGTACAATAT GGGCCGATTG ACCCTATAGA AGCTCGAGAT ATTTTTGTGC GTAGTGCTTT AGCCGAAGGG CAGTTACAAA CGAAAGAAAC GTTTTTTGTT AATAACCAAA AATTGCTTAA TGACATAGAG TCGCTAGAAC ATAAATCTCG CCGGCGAGAT ATTTTGGTCG ATGAGCAAGT GTTGGTGGAT TTTTACGAAC CGCTAATACC AGCTGGCATT TATAATGGAC CACTATTTTT TGCTTGGTGG AAAAAAGCGC GTCAACAAAC GCCTGACTTA CTCGATTACA GCCAAGCATT ATTAATGCAG CGTAGTGCCG ATCATATATC AGCGCTCGAT TTTCCAGAAA TATGGCATAA AGGTAATCTC GGCTTAACCG TCAGTTATCA TTTTGAACCG GGTAGTGTTG ATGACGGCGT ATCTGTGCAT ATTCCTGTTG CACTGATTAA TCAAATTGAT GACAGTGACT TTGATTGGTT AGTGCCTGGG TTGCGACAAG AAAAACTGAT TGCACTGATT AAATCCTTGC CTAAAAATCT ACGTCGTAAT TTCGTTCCCG CACCAGATTA TGCTCGGGCA TGCTATCAAG CGATGAAGCC GTTTGAGTTA TCGATGCTTG ATACCATGTG TAAACAGTTA CTGCGCATGA GCGGTGTACG CATTTCTGCT GATGATTTTG ATGTAACTCA ACTGACAGAA CATCTTAAGA TGAACTTTAA GATTGAGGAT GACCATGGTC GCTTAGTCGC CCAAGGTCGT GATTTAGAGC TGTTAAAAGG TCAACTGCAA GGTGTTGTTG CTAAAGCAAT ACGTAAAGTG GCAGACAAAG GCATTGAGCA AGAGGCAATA ACCACATGGT CATTTGGCGA TTTACCCGCT CAATATCAGC AGCGCAAAGG TAATTACGAA GTTAAAGCGT ATCCGGCATT AATTGATAAT AAAACCGATG TGGCGATTAA GTTATTTGAT GATGAACATG AAGCAAAACG TCATCATCGA GTAGGGTTGC GCCGATTACT GTTGATTAAC ATACCTTCGC CAGTGAAACA TTTACAACAA GCTTTGCCTA ATAAAGCAAA GCTAGCGATG TACTTTAATC CATTTGGACA AGTGCAGATA TTAATTGAAG ATATTATTAA TGCAGCGGTA CAGCAGTTGT TAGATCAAAA GCAACTAGAT ATTCGTAACG AGCAGCAGTT CGAACAAGCA AAAGAGTGGG TTCGCCAAGA GCTCAACCCA ACAGCAGAGA ATATTGCGCT AAATGTAGAA CAAATTTTGA CAATTTATCA ACGTATTAAA AAACGTCTTA AAGGCAAAAT TAGTTTAGAT ATTGCATTTG CAATGAGTGA TATTCAAACT CAGCTTGATA GTCTTGTTTA TAAAGGATTT GTCGAAGACT GTGGCTGGCA ACGGTTAACG GATGTTGTTC GTTATTTAAA AGCCATTGAA AATAGACTCG ATAAGCTACC TGTTGACCCT ACACGCGATC GATTACACAT GCATAGTATT GCAAAAGTAC AAGAGGCGTT AACGGCTCAG TTAGCGAAAG TGCCACGTTC ACAACCGGTC CCAGAAGCAC TAATTGAAGC TCGCTGGATG ATAGAAGAGT ACCGAGTATC TTGTTTTGCT CAGGTATTAG GTACCGCTTA TCCTATTTCA GAAAAGCGAG TATTGAGTTC TATCAGTCAA GTGTAA
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Protein sequence | MNSDLHPLSK AYLNLCYQTD AAKIRRRLYR VNKEAESEKK SQTLAQLTEA AQQAYQKAQQ RLQSRPIISY PDELPVSQKR DDIASAIANN QVVIVAGETG SGKTTQLPKI CLELGLGTRG LIGHTQPRRL AARSVANRIA DELNSPLGEV VGFKVRFADA MSDNSYIKLM TDGILLAELT SDRFLNQYDA IIIDEAHERS LNIDFILGYL KQVLKKRPDL KVIITSATID VDRFSKHFNN APVIEVSGRT FEVETRYRPL VRDTDADLDV SDGIFAAVEE LMAAGPGDIL IFMNGEREIR DTADLLNKQQ YRDTEVLPLY ARLSYGEQSK VFKSHIGRRI VLATNVAETS LTVPGIRYVI DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVG PGICIRLYDE MDFIQRPEFT DPEILRTNLA SVILHMLAIG LGDIGGFPFI QPPDQKHIRD GFLLLEELQA VKKSGHDLVL TPLGKDLAKI PLDPRLARMV IEANKLGCLH EALVITAGLS IQDPRERPAE KKQAADECHR RYADKDSDFA SWVKLWDHVK DQKHELSASQ FRKQCRDEYL AYLRVREWQD LYTQVKQAVH ELKWRINDSA ASYEQLHRAL LSGLLSHVGF KGENNEYLGA RNRKFFVFPG SPLAKKGPKW IMAAELTETS RLFARCCAKI DPEWLESLAS HLVKKNYLEP HFEAKAASVI ALENQVLYGL TIVNRRRVQY GPIDPIEARD IFVRSALAEG QLQTKETFFV NNQKLLNDIE SLEHKSRRRD ILVDEQVLVD FYEPLIPAGI YNGPLFFAWW KKARQQTPDL LDYSQALLMQ RSADHISALD FPEIWHKGNL GLTVSYHFEP GSVDDGVSVH IPVALINQID DSDFDWLVPG LRQEKLIALI KSLPKNLRRN FVPAPDYARA CYQAMKPFEL SMLDTMCKQL LRMSGVRISA DDFDVTQLTE HLKMNFKIED DHGRLVAQGR DLELLKGQLQ GVVAKAIRKV ADKGIEQEAI TTWSFGDLPA QYQQRKGNYE VKAYPALIDN KTDVAIKLFD DEHEAKRHHR VGLRRLLLIN IPSPVKHLQQ ALPNKAKLAM YFNPFGQVQI LIEDIINAAV QQLLDQKQLD IRNEQQFEQA KEWVRQELNP TAENIALNVE QILTIYQRIK KRLKGKISLD IAFAMSDIQT QLDSLVYKGF VEDCGWQRLT DVVRYLKAIE NRLDKLPVDP TRDRLHMHSI AKVQEALTAQ LAKVPRSQPV PEALIEARWM IEEYRVSCFA QVLGTAYPIS EKRVLSSISQ V
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