Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1401 |
Symbol | |
ID | 4277094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1672852 |
End bp | 1674813 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638134175 |
Product | DNA topoisomerase III |
Protein accession | YP_750091 |
Protein GI | 114562578 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTTAT ATATTGCTGA AAAACCCAGT TTAGGTCGTG CTATTGCCGA TGTTCTGCCA AAACCACATA AAAAAGGTGA TGGCTTTATC ACTGCTGCTA ATGGTGATTG CGTGTCATGG TGTATTGGCC ATTTGCTCGA ACAAGCAGAA CCGGACGCCT ATGACGATGC ATTTAAGTCA TGGAAACTCG AACATCTTCC CATCGTGCCA CAAACGTGGA AACTACAGCC AAAACCTAAA ACACGCAGTC AACTTACGGT GTTACGTAAA CTGGTTAAGC ACGCGTCATC GATAATTAAT GCTGGCGATC CAGACCGAGA AGGGCAGTTG CTGGTCGATG AAGTGATTTC TTATTTGGGT GTGAAAGGAG ACAAACTCAA TCAAGTTCAG CGCTTATTAA TTAGTGATTT AAACCCACAA GCCGTAAAAC GCGCGCTAGG GCAGTTACGC AAAAATCGTG AGTTTGTGCC GTTATCGACC TCGGCATTAG CACGAAGCCG CGCTGATTGG TTATATGGCA TGAACATGAC TCGCGCTTAC ACTATCCAAG GACGAAAAGT CGGCTATCAA GGTGTGTTGT CGGTTGGTCG AGTACAAACA CCGTTACTCG GGTTAGTGGT ACGCCGCGAT GATGAAATCG CTGATTTTAC CCCTAAAGCA TTTTACGAAG TATTAGCCCA TTTATTGACA GACCAACAAC AAGCATTCAC CGCAAAATGG CAACCTAGCG AAGCATGTCA ACCATATATG GATGAAGACG GCCGAGTGTT AGCTAAAGGT TTAGCCGAAA ATGTCGTTGC CCGTATCAAT GATAAACCTG CGGAAGTCAC TAAAATTGAA GCTAAAGATA AGCGCCAAAA CCCACCATTA CCTTACAGCT TATCGGCTCT GCAAATAGAT GCTGCTAAAC GTTTTGGGTT ATCGGCAAAA GAGGTACTGG ATACTTGCCA AAGTTTGTAT GAGCGCCACA AATTGATTAC TTATCCGCGC TCAGACAGTC GCTATTTACC TAAAGAGCAG CATGCTTTGG CACCAAAAGT ATTGGATGCC GTGCTCAAAG GCGCTTCAGG CTTAATTGAA GGTTGTGAGT CTCCTAATAG CAAACTTAAA TCTAAAGCGT GGGACGACAG TAAGGTAGAT GCTCACCATG CGATAGTGCC AACTGAAAAG GTGGCTAACT TATCGACATT ATCAAGCAAT GAAGCCAAGT TATATCAACA CGTGGCAAGG CAATATTTAG CCCAGTTCTA TCCCGCTTAT ATCTATGCAG AAACCGCAGT TGAAGTGACC ATTGCCGGTG GATTATTTAC CACTAAAGCA CGTCAGGATA AAACTTTAGG TTGGAAGCAA TTATTTAAGC GGACTGCCAC AGTAAATCAA GCTAGTTCTA ATTCAACTAG CAGCGATGAC GACAATGATG ATGCGGTACT GTCGTTACCG CCACTGGTTA AAGGGCAAAT ATTGCATTGT CAGCGTGGTG AATTACTACA GAAAATGACT CAAGCACCGA AGCATTTTAC CGACGCCACT TTATTAGGCG CGATGACGGG CATTAGCCGT TACGTAACAA ACAGTGAAAT TAAAAAAATC CTTAAAGAAA CCGATGGCTT AGGTACAGAG GCCACTCGTG CAGGAATTAT TGAATTGCTG TTTAAGCGCG GTTATTTAGT TCGCCAAGGA AAATCAATAT TGGCAACGCC CGTCGGTGTT GGCTTAATCC GCAGTTTACC CGAATCAGCA ACCACACCCG ACATGACCGC CTTATGGGAA AACAGCCTCG ATGCTATCAG CCAAAAACGT TTAAAGTACG ATGCCTTTAT GCAGCCATTG TTGAGCCAGT TAGATGGCCT AATCACTCAA GCATCGAGTC AGTTACCCTC AGCATTACAA GGTGTTGCCA GTAGCGCACC AAAACGCAGC TTTAAGAAAT CGTATAAAAA GAAGGCTAAA GCGAAAAGCT AA
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Protein sequence | MILYIAEKPS LGRAIADVLP KPHKKGDGFI TAANGDCVSW CIGHLLEQAE PDAYDDAFKS WKLEHLPIVP QTWKLQPKPK TRSQLTVLRK LVKHASSIIN AGDPDREGQL LVDEVISYLG VKGDKLNQVQ RLLISDLNPQ AVKRALGQLR KNREFVPLST SALARSRADW LYGMNMTRAY TIQGRKVGYQ GVLSVGRVQT PLLGLVVRRD DEIADFTPKA FYEVLAHLLT DQQQAFTAKW QPSEACQPYM DEDGRVLAKG LAENVVARIN DKPAEVTKIE AKDKRQNPPL PYSLSALQID AAKRFGLSAK EVLDTCQSLY ERHKLITYPR SDSRYLPKEQ HALAPKVLDA VLKGASGLIE GCESPNSKLK SKAWDDSKVD AHHAIVPTEK VANLSTLSSN EAKLYQHVAR QYLAQFYPAY IYAETAVEVT IAGGLFTTKA RQDKTLGWKQ LFKRTATVNQ ASSNSTSSDD DNDDAVLSLP PLVKGQILHC QRGELLQKMT QAPKHFTDAT LLGAMTGISR YVTNSEIKKI LKETDGLGTE ATRAGIIELL FKRGYLVRQG KSILATPVGV GLIRSLPESA TTPDMTALWE NSLDAISQKR LKYDAFMQPL LSQLDGLITQ ASSQLPSALQ GVASSAPKRS FKKSYKKKAK AKS
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