Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1390 |
Symbol | |
ID | 4277013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1655505 |
End bp | 1657598 |
Gene Length | 2094 bp |
Protein Length | 697 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134164 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_750080 |
Protein GI | 114562567 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAACAAAA CACCTTTATT ATCTGTATCC CCGAACCTAC ACGAGTTGCA TATTTGTGAA TTACTGGGCA ACAACGCCAA TCAAAATAGC CGATATTCCC ACATTGTTAA GCAGTATATC GCCGAAGTAT TGCAAAGCAG TGACGATAAA ATAGCAGCCA CAAATACTCA ACCACATTTA CTAACGCTAG GCCAACTCGG TTTTGGCGAT GGCCACGAAA TAATACTATT ACTGGCAGCC TTACAAGAGG CTAACTTGCA AAATCCTTTG ATACAGCAAC AAACTCGAAT TCACATCAGT GTATTTGAAC AAGGCCCAGT AAACTGTAAG CAACTGCAAC ATACATGGCA ACAACAAGGG CTACTTGATT CAGACCATCA TTTATTCGAT TTTACCCAAG CATTACTCAA TGGTGAAATT GCAGCCATCG AAGGTTGCCA GCGACTGAGT CTACTCCAAA ACCAAATTAT CATTGACCTG TATCAAGGTT CGCCACTAGC GCAAGCCAAA ACCATTGCTA CGCCGAATAA ACAAAGGATA ACACATTGGT TTGCCCTACC CCATACGAAC CAAGAGGCTC ATTCAGATCA ATATTTTCAT CAGCGTTCAG TTTGGGAATA TGGTCGACTC AGTGTTGATA ATGCAACATT TTTAGCGGCT AGCACAAATG ACGAAAATAT TGCTCCAACT ATCAAAAAGC AACTAGCATT TTGCGGATTT TTATCCTCCA CATCATTCAA ATCGACTGAT GACATTGCTA TCGCAGAACG TAACGCGCTA AGACAACAAC TACAGCAACA GTTTGCTTAT AACCCATTGC CACCGTTACA TTCTAATAAC AACAGCCCTA TAGCTATTAT AGGTGGCGGT ATCGCTTCTG CAAGTCTTGC CTTGTCTCTG GCTGAACGCG GCAAAGATGT GATTATTTAT TGCAAAGATG ACACATTAGG ACAAGGCGCA TCAGGCAACA AACAAGGTGC TATTTATCCC CTGCTTACAC CCGAAAATGG CTCGCTAAGT CAATTTTTCC AACAAGTCTT TCTATACAGT CGACGCAGAA TTCAGGCATT AGTTGATGAT GGATATGACA TAGGACATGA GTGGTGTGGT GTATTACACA CAGGTTTCGA TCAACGTAGC CAAACAAGAT TGGATAAAAT TATTGATGGC CAAGCATGGC CAAGTGAAAT TGCTTTTGCT GTCAGTCCAC ACCAAGCTAC ACAACTTGCT AACGTCGATA TTGATAAACC TGGCTTTTAT TATCCATTAG GCGGTTGGGC TTGTCCGTTT GAATTCGCAC AAGCAAGTAT TGCCAAAGCA CAAACATTAA CCAAAGTTCG CATTGTCTAT AATAGCGACA TTAGCTCACT TGAATCACAC TCATCTGGCT GGCAACTGTT TAGCGCCGAA GACAATACCC CTATAGCAAC CCACGAACAG GTTGTCATCG CATCAGGAGC TCAACTTACT CAGTATAAAC AGACAAAAAA CCTGCAAATC ACTGGGTTTA GAGGTCAAGT TAGCCATGTA CCGCCACAAG GTGAACTGGC ACAGCTTAAT ACTGTTATCT GCGCCAATGG TTATTTAACG CCACAACATA ACCAATTACA TTGCGTTGGA GCAAGTTATG TAAAAGACCC ACAACATCTT GATTTTTGCC CGATAGAGCA GCATGAAAAC AGCCTTAAAA TGAAACAAAG CTTTCCTAAT TCAAACTGGC CTAATGATAT TGATGTTTCA AACAACGATG CCAGAGTTGG CGTAAGGATG GTCAGTCGCG ATCACTTTCC GGTAATGGGT TGTGCGCCTG ATGTTGAAGC GTTATTTACA CGCTATGCTG TTCAACAGCA ATCGAAAGAC AAACCCAGTC TATGGCAACA TTACTGGCAA ACAACACCAG CACCAATTTA TGACGGGTTA TATGTGTTAG GAGGACTAGG CTCACGCGGC CTAAGCTCAG GCCCATTAGT CGCCGAATGC TTAGCAGCAA ATCTATGTGG CGAATTATCA CCATTAAGCG TAGAGCTACA AGCCTTACTT AGCCCTAACC GAATGTGGCT GCGTAAACTG CTTAAAGGAA AAGCGTTGAT GTGA
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Protein sequence | MNKTPLLSVS PNLHELHICE LLGNNANQNS RYSHIVKQYI AEVLQSSDDK IAATNTQPHL LTLGQLGFGD GHEIILLLAA LQEANLQNPL IQQQTRIHIS VFEQGPVNCK QLQHTWQQQG LLDSDHHLFD FTQALLNGEI AAIEGCQRLS LLQNQIIIDL YQGSPLAQAK TIATPNKQRI THWFALPHTN QEAHSDQYFH QRSVWEYGRL SVDNATFLAA STNDENIAPT IKKQLAFCGF LSSTSFKSTD DIAIAERNAL RQQLQQQFAY NPLPPLHSNN NSPIAIIGGG IASASLALSL AERGKDVIIY CKDDTLGQGA SGNKQGAIYP LLTPENGSLS QFFQQVFLYS RRRIQALVDD GYDIGHEWCG VLHTGFDQRS QTRLDKIIDG QAWPSEIAFA VSPHQATQLA NVDIDKPGFY YPLGGWACPF EFAQASIAKA QTLTKVRIVY NSDISSLESH SSGWQLFSAE DNTPIATHEQ VVIASGAQLT QYKQTKNLQI TGFRGQVSHV PPQGELAQLN TVICANGYLT PQHNQLHCVG ASYVKDPQHL DFCPIEQHEN SLKMKQSFPN SNWPNDIDVS NNDARVGVRM VSRDHFPVMG CAPDVEALFT RYAVQQQSKD KPSLWQHYWQ TTPAPIYDGL YVLGGLGSRG LSSGPLVAEC LAANLCGELS PLSVELQALL SPNRMWLRKL LKGKALM
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