| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1316 |
|---|
| Symbol | |
|---|
| ID | 4277378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1568160 |
|---|
| End bp | 1569491 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638134091 |
|---|
| Product | Beta-glucosidase |
|---|
| Protein accession | YP_750007 |
|---|
| Protein GI | 114562494 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | [TIGR03356] beta-galactosidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA TGTTACCAGC CGATTCCAAA ATGCATTCAA AAGCGTTCAC CTTTGGTGTG
GCGACTGCTT CTTTTCAAAT TGAAGGCGCA GTGGATTATC GTCTTCCTTG TATATGGGAT
ACCTTTTGTG CCACGCCAGG TAAAATTCGT GATAACTCTG ACGGCTCGCA AGCATGCGAG
CATGTAAAGT TATGGCGTGA AGATGTCGAT TTAATTGAGT CGCTGGGCGT TGACGCTTAT
CGCTTATCCA TTTCGTGGCC ACGCGTAATG CATAAAGATG GCAGCCTCAA TCCACAAGGT
GTCGCGTTTT ATACTGATTT GCTTGATGAA CTAAATCGTC GTGGCATTAA AACCTTTGTG
ACCTTATACC ATTGGGATTT ACCACAACAT ATTGAAGATA ATGGTGGCTG GTTAAATCGT
GAAACAGCTT ATTTGTTTGC AGACTATGCC GACAAAATTA CTCAAGCATT TGGCGATCGA
GTGTATTCTT ACGCCACGTT TAACGAACCA TTTTGCAGTT CATATTTAGG CTATGAAATT
GGTGTTCATG CACCAGGTTT AGCCACTAAA GCATTTGGTC GTCAATCTGC ACACCATTTA
TTATTGGCTC ATGGTTTAGC CATGAAAGTA TTGCAAAAAA ATAGCCCTAA TAGCCAAAAT
GGTATCGTGC TTAACTTCAC GCCTTGTTAT AGCGCAACAG ACTCTGCCGC AGATGTTGAA
GCAGCCAGTA AAGCCGACCA ATACTTTAAT CAATGGTATA TCAAACCACT GTTTGACCGT
TGCTACCCTG AGATTATTAA TGACTTCGCC ACTGAAGATA TGCCCGTTAT TGAACAAGGC
GACTTTGATA TTATTGCTCA ACCTATCGAC TTTTTAGGCA TCAACTTTTA CACCCGAGCA
GTGTACAAAG CAGATCCAGC CACTGGTTTT AGCCAAATTG ATATGGTCGA CAAACCTAAA
ACGGATATCG GCTGGGAAAT ATACCCACAA TCCTTTACCG ATTTATTGAC TTCACTGCAT
GCACTTTATC CTTTACCGCC GATCTACATT ACCGAAAACG GCGCAGCAAT GGACGATAAA
TTGATAGAAG GTAAAGTGGA TGATCAAGAC AGACTCGAAT ACTATAACGC CCACTTAAAT
GCAGTAAATA ATGCCATTGA ACAAGGTGTT AATGTTGTCG GCTATTTTGC ATGGAGTTTA
ATGGACAATT TTGAATGGGC TGAAGGCTAC TTAAAACGTT TTGGGATTGT CTATGTAGAC
TACGAAACTC AAAAACGCAC CTTAAAAGCC AGTGCACATG CTTATAGAGA TTTTATTAAC
GCACGAAAAT AA
|
|---|
| Protein sequence | MKIMLPADSK MHSKAFTFGV ATASFQIEGA VDYRLPCIWD TFCATPGKIR DNSDGSQACE
HVKLWREDVD LIESLGVDAY RLSISWPRVM HKDGSLNPQG VAFYTDLLDE LNRRGIKTFV
TLYHWDLPQH IEDNGGWLNR ETAYLFADYA DKITQAFGDR VYSYATFNEP FCSSYLGYEI
GVHAPGLATK AFGRQSAHHL LLAHGLAMKV LQKNSPNSQN GIVLNFTPCY SATDSAADVE
AASKADQYFN QWYIKPLFDR CYPEIINDFA TEDMPVIEQG DFDIIAQPID FLGINFYTRA
VYKADPATGF SQIDMVDKPK TDIGWEIYPQ SFTDLLTSLH ALYPLPPIYI TENGAAMDDK
LIEGKVDDQD RLEYYNAHLN AVNNAIEQGV NVVGYFAWSL MDNFEWAEGY LKRFGIVYVD
YETQKRTLKA SAHAYRDFIN ARK
|
|---|
| |