Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1270 |
Symbol | rpsB |
ID | 4277402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1504247 |
End bp | 1504975 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638134045 |
Product | 30S ribosomal protein S2 |
Protein accession | YP_749961 |
Protein GI | 114562448 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0052] Ribosomal protein S2 |
TIGRFAM ID | [TIGR01011] ribosomal protein S2, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00260886 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTACTG TTTCAATGCG CGACATGCTA CAAGCTGGTG TTCACTTCGG TCACCAAACT CGTTACTGGA ACCCTAAGAT GAAGCCTTTC ATCTTCGGCG CTCGTAATGG TGTACACATC ATCAACCTTG AGCATACAGT ACCAATGTTC AACGAAGCTC TAGCTTTCAT TAGCAACATT GCTTCTAAGA AAGGTAAAGT ATTATTCGTA GGTACTAAGC GCGCTGCTGG CGAAGCTATC AAAGCATCTG CACTTTCTTG TGATCAGTAT TATGTTGATC ATCGTTGGTT AGGCGGCATG TTAACTAACT GGAAAACTGT TCGTCAGTCA ATCAAGCGTC TTAAAGAGCT AGAAAGCCAG TCTGTAGACG GTACTTTCGA CAAGTTAACT AAGAAAGAAG CGTTAATGCG TTCACGCGAA TTAGACAAGT TAGAAAAGTC TTTAGGCGGA ATCAAGAACA TGGGCGGTTT ACCTGACGTA TTATTCGTTA TCGGTGCTGA CCATGAGCAT ATCGCGATTA AAGAAGCAAA CAACCTAGGT ATTCCAGTTG TTGCAGTTGT TGATACCAAC TCTGCACCAG ACGGTGTTAA CTACATCGTT CCTGGTAACG ACGACGCAAT GCGTGCTATC CGTTTGTACA CTTCTTCTGT TGCTGCAGCT GCTAACGCTG GCCGTGGTCA AGATTTAGCT GTTCAAGCTG AGCAAGACGG TTTCGTAGAA GCTGTTTAA
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Protein sequence | MTTVSMRDML QAGVHFGHQT RYWNPKMKPF IFGARNGVHI INLEHTVPMF NEALAFISNI ASKKGKVLFV GTKRAAGEAI KASALSCDQY YVDHRWLGGM LTNWKTVRQS IKRLKELESQ SVDGTFDKLT KKEALMRSRE LDKLEKSLGG IKNMGGLPDV LFVIGADHEH IAIKEANNLG IPVVAVVDTN SAPDGVNYIV PGNDDAMRAI RLYTSSVAAA ANAGRGQDLA VQAEQDGFVE AV
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