| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1212 |
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| Symbol | |
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| ID | 4278026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1421892 |
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| End bp | 1422797 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133987 |
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| Product | alpha-L-glutamate ligases, RimK family protein |
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| Protein accession | YP_749903 |
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| Protein GI | 114562390 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0387338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCATATTG CAATAATGTC GAGAAATAAG AATTTATACT CGACAAGTCG GTTAAAAGAA
GCTGCTGAAG CTCGCGGTCA TGTCATAAAA ATTGTCGACC CATTAAAGTG TTATATGAAC
ATCAATATGA ATGCCCCTAG CATTCATGTT CGTGGTGAAG AACTACCAAA ATTTGATGCG
GTTATTCCAC GTATTGGTGC ATCTGTCACT TTTTATGGTA CCGCGGTATT GCGCCAGTTT
GAGATGATGG GCACTCACCC GTTAAACGAG TCTGTTGCTA TTACTCGCTC ACGGGATAAA
TTACGTTCAT TGCAACTCTT GTCTCGTAAG AATATTGGTT TACCCGTGAC TGGTTTTGCT
AGTAAGCCTG CTGATATTCC TGATTTATTG GACATGGTTG GTGGTGCCCC TTGTGTTATT
AAGTTACTTG AAGGTACTCA AGGTATTGGT GTTGTCTTAG CTGAAACTCG TAAAGCGGCT
GAATCTGTTA TTGAAGCATT TATGGGCCTA AAAGCTAACA TCATGGTGCA AGAATATATC
GCTGAAGCTG GAGGTGCAGA TATCCGCTGC TTCGTTATTG GTGATAAAGT GATTGCTGCA
ATGAAACGCC AAGCATTACC CGGTGAGTTC CGTTCTAATT TACACCGTGG GGGTTCTGCT
AGCATTGTTA AGTTAACGCC TGAAGAGCGT TCGACCGCGT TGCGTGCTGC CAAAACAATG
GGTCTTAATG TCGCTGGTGT AGATATTTTA CGTTCAAAAC ACGGCCCATT AGTGATGGAA
GTTAACTCAT CTCCAGGTCT TGAAGGCATC GAAAAAGCTA CTGGTATTGA TGTTGCTGAA
AAAATTATTC AGTTTATTGA GAAAAACGTT AAATCCACAA GTTCAAAAAC GAAAGGTGTT
GGTTAA
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| Protein sequence | MHIAIMSRNK NLYSTSRLKE AAEARGHVIK IVDPLKCYMN INMNAPSIHV RGEELPKFDA
VIPRIGASVT FYGTAVLRQF EMMGTHPLNE SVAITRSRDK LRSLQLLSRK NIGLPVTGFA
SKPADIPDLL DMVGGAPCVI KLLEGTQGIG VVLAETRKAA ESVIEAFMGL KANIMVQEYI
AEAGGADIRC FVIGDKVIAA MKRQALPGEF RSNLHRGGSA SIVKLTPEER STALRAAKTM
GLNVAGVDIL RSKHGPLVME VNSSPGLEGI EKATGIDVAE KIIQFIEKNV KSTSSKTKGV
G
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