Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1194 |
Symbol | fliR |
ID | 4277063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1403248 |
End bp | 1404051 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638133969 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_749885 |
Protein GI | 114562372 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATTT TGTTTGATGA AATCAGTCAA ACAATTGCCG CATATCTTTT GCCGTTTTTT CGTATTTCAT CCATGCTCAT GGTGATGGCG GTATTTGGCG CCAATACTAC TCCTGCTCGA GTTCGATTGA TGTTATCCGT AGCGATAACG ATGGCCGTGG CGCCTATTTT ACCCCCTATT GAAAACGTCG AGTTACTGGC ATTGAGTTCT GTTTTTGTCA TTGCTCAGCA AATTTTAATT GGCGTCACCA TGGGATTTGT GACCTTAATG GTGATGCAGA CATTTGTATT AACAGGGCAA ATAATTGGTA TGCAAACCAG TTTAGGTTTT GCCTCTATGG TCGACCCCGG TTCTGGTGAG CAAACGCCTG TTGTGAGTAA CTTTTTCCTA TTATTAGCAA CACTTATCTT TTTAGCTGTT GATGGCCATT TGTTAATGAT ACGGATGTTA GTGGCCAGTT TTGAAACCAT TCCTATTTCA AATCAAGGTA TATCAATTGC CAATTATCGT GCGCTTGCTG ATTGGGGAAG TTTTATGTTT GGCTCTGCGT TAACGATGTC GATTTCGGCT ATTGTTGCGT TGTTATTAAT CAATTTATCC TTTGGTGTGA TGACCCGCGC CTCACCTCAA TTAAATATTT TCTCTATTGG TTTTCCGGTC ACAATGGTCA GTGGTTTGTT GATTTTGTGG TTAACATTAG CACCTATCAT GGCGCATTTT GATGAAGTGT GGATGGCTGC GCAGTTACTT ATGTGTGATG TTCTGCAACT TCAATGTCAA CTTGATGGCT CAGTAGTATT CTAA
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Protein sequence | MDILFDEISQ TIAAYLLPFF RISSMLMVMA VFGANTTPAR VRLMLSVAIT MAVAPILPPI ENVELLALSS VFVIAQQILI GVTMGFVTLM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGE QTPVVSNFFL LLATLIFLAV DGHLLMIRML VASFETIPIS NQGISIANYR ALADWGSFMF GSALTMSISA IVALLLINLS FGVMTRASPQ LNIFSIGFPV TMVSGLLILW LTLAPIMAHF DEVWMAAQLL MCDVLQLQCQ LDGSVVF
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