Gene Sfri_1159 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1159 
Symbol 
ID4277868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1367134 
End bp1368054 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content39% 
IMG OID638133934 
Productresponse regulator receiver modulated CheW protein 
Protein accessionYP_749850 
Protein GI114562337 
COG category[K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG0835] Chemotaxis signal transduction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.601808 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGAGCA TTTTAGATTC AGTAAATAAA CGTACCCAAC TTGTCGGGCA AAACAGACTA 
GAGCTGCTAT TGTTTAGGCT TAGCGGCCGT CAACGGTTTG GCATTAACGT GTTTAAAGTG 
AAAGAGGTTT TGCAATGTCC ACCACTGACT ACGTTGCCTA AATTAAACCG TTTTGTTAAA 
GGTGTTGCTC ATATTCGTGG TGCAACTATT TCCGTTATCG ATTTAAGTGC AGCAACGGGT 
GGACGTCCAC TGACATCAAC AGAAAATTGC TTTATTATCA TTTCCGAATA TAACCGTAGT 
ATTCAAGGTT TTTTAGTGAG TTCTGTTGAA CGTATTATCA ACATGAACTG GGAAGCGATT 
ATGCCTCCAC CGCAAGGTTC TGGCCGTTCT TCTTATTTAA CCGCGGTGAC AGAGATTGAA 
GGTGAGTTGG TTGAGATTCT AGACGTTGAA AAAATTCTTG ATGAAATTTC ACCGGTTAAG 
ACTTCTATCA GTAAAGAGCT CAATGAAGCA TTAACTATTG ATAGAGAACA GCATTATCAT 
ATTATGGTTA TTGATGATTC AGCAGTGGCA CGTAAACAAA TTATTCGTTC GTTAGAGTCA 
TTAAATCTGC AAATCGATAC CGCTAAAGAT GGTAGAGAGG CGTTAGAAAA ACTGAAAAGT 
ATTGCCGCAG AAATGGATGA TGTGTCAGTT GAGATCCCGT TAATCATTTC TGATATTGAA 
ATGCCTGAAA TGGATGGCTA CACCTTAACG GCTGAAATTC GTAATGATCC AAAATTAAAG 
AATATCAAAG TTGTATTGCA CACATCATTA AGTGGTGTAT TTAACCAGGC GATGGTACAA 
AAAGTAGGGG CTAACGACTT TATTGCTAAG TTTAACCCCG ATGAGTTAGC CGCCGCGGTT 
AACAAACATT TAAGTTTATA A
 
Protein sequence
MSSILDSVNK RTQLVGQNRL ELLLFRLSGR QRFGINVFKV KEVLQCPPLT TLPKLNRFVK 
GVAHIRGATI SVIDLSAATG GRPLTSTENC FIIISEYNRS IQGFLVSSVE RIINMNWEAI 
MPPPQGSGRS SYLTAVTEIE GELVEILDVE KILDEISPVK TSISKELNEA LTIDREQHYH 
IMVIDDSAVA RKQIIRSLES LNLQIDTAKD GREALEKLKS IAAEMDDVSV EIPLIISDIE 
MPEMDGYTLT AEIRNDPKLK NIKVVLHTSL SGVFNQAMVQ KVGANDFIAK FNPDELAAAV 
NKHLSL