| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1132 |
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| Symbol | |
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| ID | 4278033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1332700 |
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| End bp | 1333383 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133906 |
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| Product | two component transcriptional regulator, winged helix family protein |
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| Protein accession | YP_749823 |
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| Protein GI | 114562310 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.12057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGATTAT TACTGGTCGA AGACGATTTA GCCCTACAAG CAAACATAAA ACAGCACCTT
ATTGATGCGC AATATACAGT TGATGTTGCC AGCGATGGTG AAGAAGGCTT ATTTCAAGCT
CAAGAATATC AATACGATGT CGCCATTATC GACGTGGGTT TACCTAAGCT TGATGGTTTG
TCATTAATCA GTAAACTACG TGAACAAGAC ATTAGCTACC CGATCATTAT TTTAACCGCT
CGAGACAGTT GGCAAGATAA AGTGGTTGGT TTAGATGCTG GCGCTGATGA TTACTTAAGT
AAGCCGTTTC AGCTAGAAGA ACTTGTCGCG CGAATTAATG CATTAATTCG CCGCTCCGCA
GGTAAAGCCA GTCCAGTAAT TCAAAATGGT CCCTTTAGTA TCAATACCCG TAGTTTAGAA
ATTAAAAAGA GCCTGCAAAT AATTAACCTC AGTGGTTCTG AGTACAAACT ATTTGAATAC
CTGATGCTGC ACCCTGGGTC GGTACATTCA AAAAGCAGTT TAATTGAACA TATTTATGAC
CAGGATTTTG ATTTAGATTC CAACGTAATT GAAGTATTTA TCCGTCGGTT ACGTAAAAAA
CTCGACCCCG ACAATCAATA TCAATTAATT GAAACACTGC GTGGTCAAGG TTATCGACTA
CGACAGTTAG CCCCAGATGC GTAA
|
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| Protein sequence | MRLLLVEDDL ALQANIKQHL IDAQYTVDVA SDGEEGLFQA QEYQYDVAII DVGLPKLDGL
SLISKLREQD ISYPIIILTA RDSWQDKVVG LDAGADDYLS KPFQLEELVA RINALIRRSA
GKASPVIQNG PFSINTRSLE IKKSLQIINL SGSEYKLFEY LMLHPGSVHS KSSLIEHIYD
QDFDLDSNVI EVFIRRLRKK LDPDNQYQLI ETLRGQGYRL RQLAPDA
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