| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1067 |
|---|
| Symbol | |
|---|
| ID | 4277829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1260428 |
|---|
| End bp | 1261558 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133841 |
|---|
| Product | sodium ion-translocating decarboxylase, beta subunit |
|---|
| Protein accession | YP_749758 |
|---|
| Protein GI | 114562245 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
|---|
| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGAT TATTGGCTTT TTGGGCTGAA ACGGGTGTCG CTAACTTTAC TGGTGGCCAA
CTGTTAATGA TGGCTGTGGG TTGTTTATTG TTATTTCTAG CGATAATTAA AGGATTTGAG
CCGTTATTGT TATTACCTAT TGGATTTGGT GCCATATTAG CCAACATTCC TAATGCAGGT
TTTACCGACG AAGGTGGCTT ACTGTATTAC GCTTATCATG TCGGGATTGA GACTGGGGTG
TTCCCATTGC TTATCTTCAT GGGTGTTGGT GCATTAACTG ATTTTGGGGC ACTCATTGCT
AATCCTAAAA CATTATTGTT AGGCGCAGCG GCACAATTTG GGATTTTCTC AACCTTAATT
GGTGCTATTG CCTTAAATTG GGTGCCTGGG TTTGAGTTTA GTATGCAAGA TGCTGCGGCT
ATTGCCATTA TTGGTGGCGC AGATGGTCCG ACGGCGATTT TCTTAGCCTC TAAACTGGCG
CCTGAATTGT TAGGGGCGAT TGCCGTTGCT GCATATTCAT ACATGGCGTT AGTGCCATTA
ATTCAGCCGC CGATCATGAA ACTGCTCACT ACCAAAGCAG AACGTGAAAT TAAAATGGAA
CAATTGCGTG AAGTCAGTAA GAAAGAGAAA ATTATCTTTC CACTGATGGT ATTAGGGTTA
ACCATTTTAT TTTTACCCGC AGCAACCCCA TTAATTGGTA TGTTCTGTTT GGGCAATTTA
ATGCGCGAAT CGGGTGTGGT GGATCGTTTA TCGAAAACGG CACAAAATGA ATTAATCAAC
ATAGTGACGA TCTTTTTAGG TCTTGCTGTT GGGTCTAAGC TCTCAGCAGA TCAATTTTTG
CGTATCGAAA CGCTAGGTAT TTTAATCCTT GGCGCGGTTG CGTTTAGTAT TGGTACTGCT
TCAGGGGTAT TGATGGCTAA ATTAATGAGT AAGCTCTCTG GCGGAAAAAT TAACCCGCTT
ATTGGCGCCG CTGGCGTTTC TGCTGTACCA ATGGCTGCAC GTGTGGTTAA TAAGGTTGGT
TTAGAGGCTA ACAACCAAAA CTTCTTACTC ATGCATGCCA TGGGGCCTAA CGTTGCAGGT
GTGCTAGGTA GTGCCGTTGC TGCTGGTGTC TTGTTGGCAG TATTAGGCTA G
|
|---|
| Protein sequence | MEGLLAFWAE TGVANFTGGQ LLMMAVGCLL LFLAIIKGFE PLLLLPIGFG AILANIPNAG
FTDEGGLLYY AYHVGIETGV FPLLIFMGVG ALTDFGALIA NPKTLLLGAA AQFGIFSTLI
GAIALNWVPG FEFSMQDAAA IAIIGGADGP TAIFLASKLA PELLGAIAVA AYSYMALVPL
IQPPIMKLLT TKAEREIKME QLREVSKKEK IIFPLMVLGL TILFLPAATP LIGMFCLGNL
MRESGVVDRL SKTAQNELIN IVTIFLGLAV GSKLSADQFL RIETLGILIL GAVAFSIGTA
SGVLMAKLMS KLSGGKINPL IGAAGVSAVP MAARVVNKVG LEANNQNFLL MHAMGPNVAG
VLGSAVAAGV LLAVLG
|
|---|
| |