| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1049 |
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| Symbol | |
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| ID | 4278214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1234926 |
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| End bp | 1237196 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133817 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_749740 |
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| Protein GI | 114562227 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000145818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACACTA TGCCATGTGC ATATGGTTGG ATGTCAGTCG GTCATGCGGC TAAGGAAGGG
TTCATGGTAT CTGTTCGCGA AGCACATTTT AATACGCAAG CATTCCAATT AGATGAGTGG
GTCGCTCGTT ATCTCGACGA CAAAGATGAT GCTCAGAAGT TATTGGTATT GATCCAGCAA
GTTGAGGCCC TACCGGTTAA AAACAAACTG GCTCATACTG AACTGCTTGC GCGCGCTCGC
GAAATGATCG AAATCTTAGC GCCGCTGAAT ATGGACATCG AAACGCTACA AGCCGCAGTA
TTATTTTTGC TATTCGATGC GGGTGTTCTC AACGAAGAGC AAATTCTAGA GCAATACGGT
GAAAACCTTG CAAGGTTAGT TGCCAGCGTT GTGACCATGA ATGCCATTGG CGCATTAAAA
GTCAGTCAAA ATTCGCGCGA TGCCGAACCT CAAATAGATA ACATCCGAAA AATGTTATTG
GCCATGGTTG AAGATGTTCG TGCCGTAGTG ATCAAATTAG CCGAACGTGT ATGCTTACTG
CGTGCGGTAA AAAACGCCGA TGAAGAAACT CGGGTATTAT TAGCACGAGA AATTGCTGAT
ATTTATGCGC CATTAGCAAA TCGCTTAGGC ATTGGTCAAT TAAAGTGGGA GCTTGAAGAT
ATTTCTTTTC GCTATTTGCA TCCAACCGTT TATAAAGACA TTGCTAAACA GCTTGATGGT
AAGCGTGTCG ACCGAGAAGT GTTTATCGAC AAGTTTGTCA CCCAGTTACA GCAACGTTTA
GATAGCGATG ATATTCGCGC CAAAGTGTAC GGTCGCCCAA AACACATTTA CAGTATTTGG
CGAAAAATGA AGGGCAAAGA TCTCAAGTTT GATGAGCTTT TTGACGTTCG TGCAGTGCGT
ATTGTCACCG AAAGATTACA AGATTGCTAT GGCGCGTTAG GGGTTGTACA TGACCTTTGG
CACCATATTC CGCGTGAGTT TGACGATTAC GTAGCAAATC CAAAACCGAA CGGCTATCAA
TCTATTCATA CAGTAGTCGT AGGTCCTGAA GGCAAAACAG TAGAAATTCA AATTCGTACT
GAGGCGATGC ATCAAGATTC TGAGCTTGGC GTTGCCGCGC ACTGGAAATA CAAAGAAGGT
GCCAGTAATA CCAAACAAAC GGGTTACGAA GAAAAAATTA ACTGGTTGCG TAAAATTTTA
CAGTGGCAAG AAGATGTCGC TGAAAGTGGT AATTTGGTTG ACGAAGTCCG TAGCCAAGTA
TTTGAAGACC GAGTCTATGT ATTTACCCCA AGTGGTGAAG TTGTTGACTT ACCTTTAGGC
TCAACTGTAC TCGACTTTGC TTATTATATT CACTCTCAAG TGGGTCATAA ATGTATTGGT
GCAAAAGTCG ACGGCCGCAT TGTGCCATTC ACGTACCAAG TTGAAACGGG TGAGCGCATT
GAGATTATCA CTTCAAAAAC GCCTAACCCA AAACGTGACT GGCTCAATCT TAATTTAGGC
TATATCAAGT CGTCTCGTTC GCGTTCAAAA ATTCAACACT GGTTTAAGCA ACAAGACCGC
GATAAAAATA TTGCCGCGGG TAAAGAGATG CTTGAGTCTG AATTAGCCCG AGTAGGTCTT
AAAATTAAAG ATGCAGCAGT GGCGGTAGAG CGCTTTAATT TAAACACTAT GGATGACATG
CTAGCAGCCA TCGGTGGGGG TGATTTACGC TTAAATCAAG TGGTTAACTT TACCGATACC
AAAATTCGCA AAGTAGAAGA CACTGACGAA AACTTACTTG AAGATATTAT AAAGAAAGCG
TCGCATAAGC CTAAAAAGTC GAGTAAAGGC CAAGTCGAAG TTAATGGTGT GGGTAATTTA
ATGAGCCACA TTGCGCGTTG TTGCCAACCC GTTCCCGGCG ATGAAATATT TGGTTATATT
ACTATGGGGC GGGGGATTTC TGTGCACCGT AGTGATTGCG AACAAGTGAA AGAATTAATG
CGTGCTCACC CAGAACGCAG TGTCGATGTG ATTTGGGGTG AGAACTATTC TGGTGGTTAT
CGTATTCGCG TTAGAGTACT TGCCCATGAT CGCAGTGGTT TATTACGAGA TTTAACCACA
GTGCTAGCGG CGGAGAAATC CAATGTGATG GCGATGAGTT CATCTTCTGA TGTTAAGAGC
CAAACCGCCA CCGTAGAGCT TGAACTTGAA TTGTATAATT TAGATGGTTT ATCACGGATT
CTCGGTAAAC TGTCGCTCGT TGATGGTGTG ATTGAGTCGC GTCGATTATA A
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| Protein sequence | MHTMPCAYGW MSVGHAAKEG FMVSVREAHF NTQAFQLDEW VARYLDDKDD AQKLLVLIQQ
VEALPVKNKL AHTELLARAR EMIEILAPLN MDIETLQAAV LFLLFDAGVL NEEQILEQYG
ENLARLVASV VTMNAIGALK VSQNSRDAEP QIDNIRKMLL AMVEDVRAVV IKLAERVCLL
RAVKNADEET RVLLAREIAD IYAPLANRLG IGQLKWELED ISFRYLHPTV YKDIAKQLDG
KRVDREVFID KFVTQLQQRL DSDDIRAKVY GRPKHIYSIW RKMKGKDLKF DELFDVRAVR
IVTERLQDCY GALGVVHDLW HHIPREFDDY VANPKPNGYQ SIHTVVVGPE GKTVEIQIRT
EAMHQDSELG VAAHWKYKEG ASNTKQTGYE EKINWLRKIL QWQEDVAESG NLVDEVRSQV
FEDRVYVFTP SGEVVDLPLG STVLDFAYYI HSQVGHKCIG AKVDGRIVPF TYQVETGERI
EIITSKTPNP KRDWLNLNLG YIKSSRSRSK IQHWFKQQDR DKNIAAGKEM LESELARVGL
KIKDAAVAVE RFNLNTMDDM LAAIGGGDLR LNQVVNFTDT KIRKVEDTDE NLLEDIIKKA
SHKPKKSSKG QVEVNGVGNL MSHIARCCQP VPGDEIFGYI TMGRGISVHR SDCEQVKELM
RAHPERSVDV IWGENYSGGY RIRVRVLAHD RSGLLRDLTT VLAAEKSNVM AMSSSSDVKS
QTATVELELE LYNLDGLSRI LGKLSLVDGV IESRRL
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