| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1024 |
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| Symbol | |
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| ID | 4277139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1201920 |
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| End bp | 1203422 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638133792 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_749715 |
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| Protein GI | 114562202 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTATT TACTAATAAC AGTGTTGTTT ATGATTGTGA TCATGCTGTG TACCATTGCA
TGTCTCCATT GGCGTCAGCA TCGTTTTATT AAACAATTAA CTCACTCGTT AGAATTACAA
TTACTCAATC AAGATTCATT TAACATAGAT TCCCCTTCAA AATCCTTAAA ACCGCTCATT
AATGTCCTTC ATCATTTGCA TCAATCAAGC CTATTTAGCA CCGAACGAGA TAAGCTAACT
GGTTTAGCTA ACCGTGTCGG CTTTAAACGA AAAATGTTGT CAAAAATGCC TATTTCAGAA
GGTATGTTAG TGCTGGTGGA TATTCGTCAA TTTCGTTTTG TGAATGATTT ATTTGGTTTT
TTATTTGGTG ACAAACTGCT GAAAGCTTTT GCCAAGCGGA TAGATAACCT GAACTGTAAA
GCACAGTTCA TCTCACGTAT GAACGGTAAT GAGTTCTTGT TGTTTTTCCA GCAACCGTTG
ACTATCGAGC AATTGCAAAC AATCAAAAAT GACTTACAAA GCCCATTTGA AATTGAACAA
CAACCAATCA GTATCAAAAT GCAGCTCGGA GTGTTGTCGT TAAATGAGCA TCATGCTGAT
GTCAGTTTGA TGTTGCGCCG TTTAGATTTA GCACTGAAGA AAGCCAAAGC ATTAAAACAG
CCGATTGCTT TTTACGACCA AGATGATGAT AAAGCACAAT ACCGAGAATT GTTGATTATT
AATGGCTTAC CTAAAGGGTT AAAGCAAGGT CAATTATTTA TGGTATTTCA ACCAAAACTA
GATATAAAAA GCGGCCGATG TAAGCAGGTC GAAGCGTTAA TTCGTTGGCA ACATGAAGGC
TTAGGATTAA TTTCTCCAAA TGAATTTATT CCATTAGCGG AACAGACCGG AATGATCGAT
ATTCTGAGTA GTTGGGTGTT AGATAACGTA TTAGCTCAAC AAGCCAAATG GCGAAATATG
GGTGTTTACG TTAATGTAGC CATTAATTTG TCATCTACTG ACTTAGACAA TCCAAACCTT
GCAGCCGATG TCGCCACCAA GCTATCCCAG TATCTGGTTC CTGCCGAAAC CATTACCATT
GAAATCACTG AAAGTGTGTT GATGAAATCG CTCGAGCAAA CGATTGTTAC CTTAAATCAA
TTACGTGATA TTGGGGTAAA ACTTGCCATT GATGATTTTG GCACTGGCCA TTCTTCTTTA
GCTTATTTGC GTCATTTACC TGTTGATGAA GTGAAAATTG ATAAAGCCTT TTTAGATGAG
TTTGAAACCT CTCACGCGGC GAAACAAATT GTGAAGACGA GTATCGAACT GGCTAAAAAT
TTAGGTTTTG AAGTGACGGT TGAAGGCGTT GAATCTAAGT CGGTATTAGA TGCATTACAT
CTTTTTGGAG TCGATACCAT TCAAGGTGAT TACTTTGCTA AACCATCTAC TGCCAGTGAG
TTTGAACATC TTTATCCGCA ACTTAATTAT CAGCAACATA ATCATCTGCA GCATAATCAT
TGA
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| Protein sequence | MNYLLITVLF MIVIMLCTIA CLHWRQHRFI KQLTHSLELQ LLNQDSFNID SPSKSLKPLI
NVLHHLHQSS LFSTERDKLT GLANRVGFKR KMLSKMPISE GMLVLVDIRQ FRFVNDLFGF
LFGDKLLKAF AKRIDNLNCK AQFISRMNGN EFLLFFQQPL TIEQLQTIKN DLQSPFEIEQ
QPISIKMQLG VLSLNEHHAD VSLMLRRLDL ALKKAKALKQ PIAFYDQDDD KAQYRELLII
NGLPKGLKQG QLFMVFQPKL DIKSGRCKQV EALIRWQHEG LGLISPNEFI PLAEQTGMID
ILSSWVLDNV LAQQAKWRNM GVYVNVAINL SSTDLDNPNL AADVATKLSQ YLVPAETITI
EITESVLMKS LEQTIVTLNQ LRDIGVKLAI DDFGTGHSSL AYLRHLPVDE VKIDKAFLDE
FETSHAAKQI VKTSIELAKN LGFEVTVEGV ESKSVLDALH LFGVDTIQGD YFAKPSTASE
FEHLYPQLNY QQHNHLQHNH
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