Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0994 |
Symbol | |
ID | 4278368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1161509 |
End bp | 1163545 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638133762 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_749685 |
Protein GI | 114562172 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.031573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGCCC GTTTTAAGTC TCTTACATGG AAACAAACAA ACTTAGTGGT ATTTACTGCT TTGTTTTTTG CAATTGCCAT CTTTATAGTA GAAATTGCGT TTATGGTCAT TACGACTAAT CAACAGCTCA CTGCAGCACA GCAAGAACTG CTAAATTCCG TAGAACAAAC CACCACCAAT GCAGTATGGT CGTTAGATGA CAAACTTGCT AGTCAAACAC TCGAAGGTAT TATCAAAGTC GATAATGTCG GTTCAGCGGT CATTGAGCTT GATGATGGTT CATTATTTGT GTCTGAGGCC AATGAATCAG ATGAATTCTC TAATAATTAC ATATCCTTAA GTAATCGCCT TTTTGGTGAA AGAAAAGAAA TTTCCCGTTC GCTGTATCGT CCGTTCTATT TTGAAGGCAA TAAACAACAG CAACTCATTG GCACACTAAC CATTTTTTAC GACACTCAAA AACTCACCAC AAAACTTTTT AGCCAACTAC AACTTGGGCT AATAGCAACA TTAGCTCGTG CATTATTACT AACACTTGTA CTAACAGTGG TGTTTCATCG TTTTCTAACA CAACCTATCG CACGTATTAG TGAAGCTATC GATAAAATTG ACCCAGATTA TCCAGATGAA AACTTGTTGC CTATGTCTCA AGCCCATAAA GATGATGAAT TAGGGCTCGT TACCAGTAAA TTTAATCAAA TTTTATTACA ATTTAGTCAG ACTCAAAATA AACTGCGCAA GATGGCGACG CGAGACCCAT TAACTGGTTT ACCAAACCGA ACCTTATTAT TAGAAACACT CAATGTGACG ATTCAACGAT CACGAGTTCA TAAACGAAAT TTTGCTCTAC TCTTTATCGA TTTAGATCGG TTTAAAAACG TCAATGACTC TTTAGGCCAT GCATTAGGGG ATCAATTCCT CGCACGAATC GCACGTATTT TAGAAAGAGT GGTCGGTGAT CGAGGCAGCG TGGTGCGTTT AGGTGGCGAT GAATTCGTGA TTTTAGCCGA TGAAATACAA ACCCCGGCAC AAGCAGCTGA TTTTGTAGAT AAGTTACTGA TCCAATTAAA TACTCCGATT CAACTAAATG AGCATGCTAT CCATCCAGCG GCTTCTATCG GGATATCAAT ATATCCAGAA GATGGTAACA CCGCAGAGGA TTTAATTCGT CATGCAGATA TTGCTATGTA CAGCGCTAAA GCCGCTGGTT CTAATCAATG GTCGTTCTTT AAACAACAAA TGACAGAACG TGCAGCTGTG AGATTACGTA CAGAAGCCTC GTTACACGAT GCGTTGAAAA ACAACGAATT TTTATTATAT TTCCAACCTA AGTTTGATTT AAACACCAAT CAAGTCGTCG GATGTGAAGC ACTTATTCGC TGGCAAAAAG ACGGTCGATT AATCAGCCCA ATGTCATTTA TCCCTGTTGC TGAAGAAACA GGTATTATCA TTCCTATCGG ACGTTGGGTT ATCGAACAAA GCTGTAAAGT CATTAGGGAA TGGCAACGAA AATACAATTA TGCGATTCCT ATTGCTGTTA ATGTGGCCTC GCAACAATTT GCCGATGCCA GTTTAGTACC TGATATAAAG CAACTGGCAA TTCGTTATCA AATACGTCCA GAATTGCTTG AAATAGAAAT AACAGAAACG TCACTGATGA ATGATGTTGA ACAAGCAATT ACCAAATTGG AACAACTCAA GTCAGCTGGT TTTGGTATTG CGGTCGATGA CTTTGGTACT GGGTATTCTT CATTATCATA TTTACGACAC TTGCCGATTA CCACGATGAA AATTGATCGT GCATTTGTTA GCGATCTTCC AGAAGATAGC GCAATTGCGT CAACTATTTT AATGCTCGGA CGCCAGCTTG ATTTGACCAT TGTTGCTGAA GGTATTGAAA ATATTCAACA GCAGGAATGG CTCAAAGAAA ATCAATGTGA AATCGGCCAA GGTTTTTACT TCAGCCAGCC ATTACCAATA GAAGAGTTTG AAGAGAAATA TATTGCCTGT AATACTGCGA AAATAATGCA CGTTTAA
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Protein sequence | MTARFKSLTW KQTNLVVFTA LFFAIAIFIV EIAFMVITTN QQLTAAQQEL LNSVEQTTTN AVWSLDDKLA SQTLEGIIKV DNVGSAVIEL DDGSLFVSEA NESDEFSNNY ISLSNRLFGE RKEISRSLYR PFYFEGNKQQ QLIGTLTIFY DTQKLTTKLF SQLQLGLIAT LARALLLTLV LTVVFHRFLT QPIARISEAI DKIDPDYPDE NLLPMSQAHK DDELGLVTSK FNQILLQFSQ TQNKLRKMAT RDPLTGLPNR TLLLETLNVT IQRSRVHKRN FALLFIDLDR FKNVNDSLGH ALGDQFLARI ARILERVVGD RGSVVRLGGD EFVILADEIQ TPAQAADFVD KLLIQLNTPI QLNEHAIHPA ASIGISIYPE DGNTAEDLIR HADIAMYSAK AAGSNQWSFF KQQMTERAAV RLRTEASLHD ALKNNEFLLY FQPKFDLNTN QVVGCEALIR WQKDGRLISP MSFIPVAEET GIIIPIGRWV IEQSCKVIRE WQRKYNYAIP IAVNVASQQF ADASLVPDIK QLAIRYQIRP ELLEIEITET SLMNDVEQAI TKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR AFVSDLPEDS AIASTILMLG RQLDLTIVAE GIENIQQQEW LKENQCEIGQ GFYFSQPLPI EEFEEKYIAC NTAKIMHV
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