| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0989 |
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| Symbol | nusA |
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| ID | 4278206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1154346 |
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| End bp | 1155845 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133757 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_749680 |
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| Protein GI | 114562167 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0722775 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAAG AGATCCTGCT AGTCGCAGAA GCGGTTTCCA ATGAGAAAGG CCTTCCGCGC
GAGAAAATTT TCGAAGCGCT AGAAATTGCA CTGGCTACCG CAACAAAGAA AAAATATGAA
GGCGATATTG AAGTTCGCGT AGCTATTGAT CGTAAAACAG GCCATTACGA CACTTTCCGT
CGTTGGATGG TGGTTGACGA TCAAGGTGAA GCTCTGGAAA ACCCATACAG CGAAATTACG
TTTGAAGCCG CTCGTTATGA AGAACCAGAG ATTCAAGTGG GTGAGTTTAT TGAAGATCAA
ATCGACTCAG TTGCATTTGA CCGTATCACC ACGCAAACCG CTAAACAAGT TATCGTACAG
AAAGTACGTG AAGCTGAACG TGCACAAATT GTTGAACAAT TTATTGAACG TGAAGGTGAG
ATTGTTACTG GTGTTGTTAA GAAAAGCACC CGTGAAAGCG TAGTTGTTGA TTTAGGTAAC
AATGCTGATG GCGTGTTATT TAAAGAAGAC TTAATCAGCC GTGAATCTTT CCGTCCTGGT
GACCGTGTGC GTGCATTATT GTACTCAGTA CGTCCAGAGG CGCGTGGCGC TCAGTTATTT
TTAACGCGCA GTAAAGCTGA AATGTTGATT GAACTGTTTC GGGTTGAAGT GCCAGAAATT
TACGACGAAT TGATTGAAGT AATGGGTGCC GCTCGTGATC CAGGTGCTCG CGCTAAAATT
GCCGTGAAAT CAAATGATCG TCGCATTGAC CCTATTGGTG CATGTGTTGG TATGCGTGGC
GCACGTGTAC AAGCCGTATC AAACGAATTA GGTGGCGAGC GCGTAGATAT CGTGTTGTGG
GATGATAATC CTGCACAATA TGTGATCAAT GCCATGGCGC CAGCTGATGT TGCATCTATC
ATTGTGGATG AAGACAACCA CTCGATGGAT ATTGCTGTAG AAGCTGACAG TTTGGCACAG
GCTATTGGTC GTAATGGCCA AAACGTACGT TTAGCGACTC AACTCACTGG TTGGGAACTA
AACGTAATGA CAGTTGAAGA CATGAACAAA AAACACCAAG CTGAAAGTGC AAAAGTGATT
GATTTGTTTG TGGCTTATCT AGATGTAGAT AAAGATTTTG CAGCCGTATT GGCTGATGAG
GGATTCACTT CGCTAGAAGA GATTGCTTAT GTCCCAGAAT CTGAACTATT AGCAGTAGAA
GGTTTCGACG AAGGAATCGT TGAAGCATTA CGTGAACGTG CAAAGGCGGC AATCTCTACA
AGAGCATTAG CGTCGGAAGA AGCGTTAGAT GGTGCAGAGC CAAGTGATGA TTTACTAGCA
TTGGAAGGAT TAGAAAGACA TTTAGCTTAT GTTCTTGCGA GCAAAGGCGT AGTGACTTTA
GAAGACTTGG CCGAGCAAGG TATTGACGAT TTAATTGATA TTGAAGAATT AACAGAAGAA
AAAGCAGGCG AGCTCATCAT GGCTGCCCGC AATATCTGTT GGTTTGGCGA AGAAGCATAA
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| Protein sequence | MNKEILLVAE AVSNEKGLPR EKIFEALEIA LATATKKKYE GDIEVRVAID RKTGHYDTFR
RWMVVDDQGE ALENPYSEIT FEAARYEEPE IQVGEFIEDQ IDSVAFDRIT TQTAKQVIVQ
KVREAERAQI VEQFIEREGE IVTGVVKKST RESVVVDLGN NADGVLFKED LISRESFRPG
DRVRALLYSV RPEARGAQLF LTRSKAEMLI ELFRVEVPEI YDELIEVMGA ARDPGARAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVI
DLFVAYLDVD KDFAAVLADE GFTSLEEIAY VPESELLAVE GFDEGIVEAL RERAKAAIST
RALASEEALD GAEPSDDLLA LEGLERHLAY VLASKGVVTL EDLAEQGIDD LIDIEELTEE
KAGELIMAAR NICWFGEEA
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