Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0980 |
Symbol | secF |
ID | 4278197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1145845 |
End bp | 1146768 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133746 |
Product | preprotein translocase subunit SecF |
Protein accession | YP_749671 |
Protein GI | 114562158 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0341] Preprotein translocase subunit SecF |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00161117 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTCAA CTCAAACAAA TTATTCAACA GACAAGCTGC AATACTTAAC TAAGTGGCGT TACGCATCGA GTCTAATCTC GATTGTATTA ATGCTGTTAT CATTAACCGT TATAGGAGTA AAAGGGTTTA ATTGGGGCTT AGATTTTACA GGCGGTGTGG TTACTGAAAT TCAAGTGGAC CATCGCATCA CTGCCAGTGA GATACAGCCA TTGATGACCG CCGCTTACAA ACAAGATGTT AGTGTTATTT CAGCCAGTGA ACCAGGCCGT TGGGTATTAC GATATGCCAA TATACCAGAT GAGAATCAAC GCCCAGAACT GGCTGAAGTA TTAGCGCCAT TAAATACGGA TATCAACGTG TTAAACAGCA GTATCGTTGG GCCACAAGTG GGGCAAGAGT TGGTTGAGCA AGGTGGTTTA GCCTTACTCG TCGCTATGCT ATGCATTATG GGGTATCTAA GCTTTCGCTT TGAATGGCGT TTAGCTTCAG GCGCTCTGTT TGCTTTGGTA CATGATGTAG TGTTTGTGTT AGCTTTTTTC GCGTTAAGCC AAATGGAATT TAATTTAACT GTATTAGCCG CGATAATGGC AATTTTAGGG TATTCGCTCA ATGACTCAAT TATTATTGCT GACAGGATCC GGGAGCAGTT AGTGGCTAAA CCACAGTGGA ATATAACTGA TATTAACAAC TTAGCGATTA AATCAACCTT TTCCAGAACC ATGGTCACAT CAGGCACTAC GTTAATAACA GTTGTGGCTT TATGGATTTT GGGTGGGGCA CCGCTTGAAG GTTTTTCTAT TGCGATGTTT ATTGGTATTT TAACCGGTAC TTGGTCATCG GTTTCAATTG GAGCTACCTT GCCAGAGTTT CTAGGCTTAA AGGCTGAGCA TTATCAAGTT ATCCCAATAC CTGATTATCC CTGA
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Protein sequence | MNSTQTNYST DKLQYLTKWR YASSLISIVL MLLSLTVIGV KGFNWGLDFT GGVVTEIQVD HRITASEIQP LMTAAYKQDV SVISASEPGR WVLRYANIPD ENQRPELAEV LAPLNTDINV LNSSIVGPQV GQELVEQGGL ALLVAMLCIM GYLSFRFEWR LASGALFALV HDVVFVLAFF ALSQMEFNLT VLAAIMAILG YSLNDSIIIA DRIREQLVAK PQWNITDINN LAIKSTFSRT MVTSGTTLIT VVALWILGGA PLEGFSIAMF IGILTGTWSS VSIGATLPEF LGLKAEHYQV IPIPDYP
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