Gene Sfri_0979 details

Gene Information

• Locus tag: Sfri_0979
• Symbol: secD
• ID: 4278196
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1144029
• End bp: 1145840
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638133745
• Product: preprotein translocase subunit SecD
• Protein accession: YP_749670
• Protein GI: 114562157
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.696029
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATCAA AATCGAATAC CAAACCGTTA AATCAATATG CTCAGTGGAA ATACTGGCTA 
TTAATTTGCA CACTAATCAT CTTATTTATG AGTGCATTGC CATCTTGGTA TGGTGAAGAT 
CCTGCCGTAC AACTTGCCGT TAAACCGACC CAATCATTAA CAGTGGAACA AATCCACCAT 
GTGTTACAAC AAGCGGGCAT AAACAGTAAG CGTATCGAGC AGCAACAAGA TAATTTACTT 
GTGGTGTTAG ATGATCCCGA TATGCAAACC CAAGCTAAAA AGACCTTAGC ACAACAGTTT 
GAACATCAGG CTCAAGTGAC CTTAGCGTTA GCTCCAGCGG CCCCAGATTG GTTATTAAAT 
TTAGGCGTTA AACCGATTAA ACTTGGTTTA GATTTACGCG GTGGAGTGCA GTTTCTACTG 
GATGTGGATC TTGATTTAGT GTTTCAAAAC CAAGCCGTAT TAGTGAGTGA TGCTGTTAAG 
CAATTTGTCA GAGAGCAGCA TATCAGCGGT GTAATGGTGC GTTTTGGCAC TGGAGCGGAA 
CTGACGGTTA ACAGCGCCAG TGATGATGCT CGTGGTCAAA TAAGACAATT TATTGGTCAG 
CAGTACCCTC AATGGCAAGT CACAGGCCAT CAACAAACAT TGAGTATCAA TCTTTCCCAA 
AGTGAACAGC TCAAATTAAC CAACTTAACT GTACAGCAAA ACTTGCAAAT TATGCGCAGC 
CGTATTGAAG AACTTGGTAT TACCGAAGCG CTAGTTCAGC GTCAAGGAGA GAACCGGATT 
AGGATTGAGT TACCAGGAGT GCAAGATCCT GCCACCGCTA AAAATGTTAT CGGTGCAACC 
GCTAGTTTGG CATTTTATCC AGTGGTGCAA GCTGACTCTC TTTATGCTGT TGTGATGAAT 
GATGAGCAGA ATAAGCCTGT TTATGTGTCA AAAAAACCAG TACTTGGTGG CGATCACATT 
ATTGATGCTC GAGCCACTAC TGGCGATTTT GGTATGGCGA AAGTCAATAT CAGTCTTGAT 
GCGGCAGGTG GCAAGTTAAT GTCAGATTTT TCACGCGATA ATATCGGTAA ACCTATGGCG 
ACTGCTTATA GCGAATACAG CAGAGATCAG CAAGGTAAAG CCAAGCAAAC CACTAAAATT 
ATTAGCGTTG CAACCATTCA GAGTCAACTC GGTAACCGCT TTGAAATCAC TGGAGCTGGC 
AGCCATCAAG AAGCGCAGCA ATTAGCTTTG TTATTAAGAG CTGGCTCTAT GACTGCACCA 
GTGACTATTG TTGAAGAACG CACTATTGGA CCTAGTTTAG GGGCCGAGAA TATTGTTAAT 
GGTTTTGCTG CGCTCGCTTT AGGTTTGTCG GCAACATTAC TGTTTATGGC TTGTTGGTAT 
CGCCGTTTAG GCTGGGTCGC TAATGTGGCA TTAATCGCCA ACTTGGTCAT GTTATTTGGA 
TTGTTAGCAC TCATTCCTGG TGCTGTATTG ACCTTGCCTG GTATTGCGGG GTTAGTGCTT 
ACTGTCGGTA TGGCAGTCGA TACTAACGTA CTTATATTTG AACGGATAAA AGAAAAGCTT 
GCAGAAGGTC GTAGCTTTGC CAGTGCGATT GATGTGGGAT TTGATAGTGC ATTTTCAACT 
ATTTTTGATG CTAACTTCAC CACTATGATT ACTGCCGTGG TGTTATTTTC AATTGGTAAT 
GGTCCTATTC AAGGCTTCGC GTTGACCTTA GGTTTAGGAT TATTAACCAG TATGTTTACT 
GGTATTTTTG CTTCGCGTGC ATTAATCAAC TTAGTTTATG GCCGTGACAC TCGTCGCGCC 
ATTAAGGTGT AA 

 

Protein sequence

MKSKSNTKPL NQYAQWKYWL LICTLIILFM SALPSWYGED PAVQLAVKPT QSLTVEQIHH 
VLQQAGINSK RIEQQQDNLL VVLDDPDMQT QAKKTLAQQF EHQAQVTLAL APAAPDWLLN 
LGVKPIKLGL DLRGGVQFLL DVDLDLVFQN QAVLVSDAVK QFVREQHISG VMVRFGTGAE 
LTVNSASDDA RGQIRQFIGQ QYPQWQVTGH QQTLSINLSQ SEQLKLTNLT VQQNLQIMRS 
RIEELGITEA LVQRQGENRI RIELPGVQDP ATAKNVIGAT ASLAFYPVVQ ADSLYAVVMN 
DEQNKPVYVS KKPVLGGDHI IDARATTGDF GMAKVNISLD AAGGKLMSDF SRDNIGKPMA 
TAYSEYSRDQ QGKAKQTTKI ISVATIQSQL GNRFEITGAG SHQEAQQLAL LLRAGSMTAP 
VTIVEERTIG PSLGAENIVN GFAALALGLS ATLLFMACWY RRLGWVANVA LIANLVMLFG 
LLALIPGAVL TLPGIAGLVL TVGMAVDTNV LIFERIKEKL AEGRSFASAI DVGFDSAFST 
IFDANFTTMI TAVVLFSIGN GPIQGFALTL GLGLLTSMFT GIFASRALIN LVYGRDTRRA 
IKV