Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0925 |
Symbol | |
ID | 4277338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1089382 |
End bp | 1090494 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133691 |
Product | permease YjgP/YjgQ family protein |
Protein accession | YP_749616 |
Protein GI | 114562103 |
COG category | [R] General function prediction only |
COG ID | [COG0795] Predicted permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000914337 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATTGTAT TTAGATATCT TATTAGTGAA GTTTTAAAAG CACAATTTGC GGTACTTTTG GTGCTGCTAA CTATTTTTAT TAGTCAACAA TTCGTGCGCG TGTTAGCCGA TGCATCTGAT GGCGAATTCC CCGCTTCTTT AGTGATGACA TTATTAGGGT TAAACCTGCC TCAATTGACG GTATTAGTGT TACCGCTGAG TTTCTTTTTA GCAATATTGT TGGCTCATGG GCGAATGTAT GCTGAAAATG AAATGGTGGT ATTGCATGGC GTCGGTGTGA GTGAATGGTA TGTCACTCGC GTAACGTTAT TGCTTGCTTT TGCCAATTTA TTATTCACGG CTTATTTGTC GGTTTATGTC GGACCGTGGG CAGAAGAACG TCAGAATCAG GTATTAGAGA AAGCGCAATC CGAAGCTGGA TTAGCAGCCT TAACGCAAGG TCGTTTTCAA GCTAGCCCAA ATGGTCGAGC CGTTTTGTTT GTTGAGAAAA TAAATAAAGA CAATACCTTA GATAAAGTCT TTGTAGCGCA ACTCCCTGAT CCGGAAGACG AAAATGGCCT GACAAATATT GTAGTTGCCA ATAAAGGTCG TGTGATTGAA GATAATATTG GCAGTCAGCA GTTACAACTT GAAAAAGGCT TCCGTTATCA GGGCAGTCCT AAATCACTCG AACTGCAAGT GATTGAGTTT GGTGGTTATA AAATGGAGAT TAAAGAACAG GAAGTTGATG AGAGGCGACG TAAATTATCT GCAATGCCAA TAGACGAATT GTTAGATACT CCAGGACCAG AAGCTGCAGC TGAATTTCAA TGGCGACTAG CTATCCCTAT CGCGATCCCA TTGTTGACCT TAATTGCCGT GCCGTTAGCG CGGGTTAATG TGCGCCAGGG TAAGTTTGCT AAAATGGGTC CCGCTATTTT GCTTTATTTA GGTTACTTTG GATTAATGAT TGCAGGCCGA AAAGCCCTGC AAGATGAGGT GGTGCCGCAG TATTTAGGCA TGTGGTGGAT CCATGGCTTT GCGTTGTTAT TAGGGTTGTT GTTACTCATT AAAGAGCGCC CTACAGGGAT GAAGTTCTTA GGCTTATTTA AACGTAAGCA GGTGATGGCA TGA
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Protein sequence | MIVFRYLISE VLKAQFAVLL VLLTIFISQQ FVRVLADASD GEFPASLVMT LLGLNLPQLT VLVLPLSFFL AILLAHGRMY AENEMVVLHG VGVSEWYVTR VTLLLAFANL LFTAYLSVYV GPWAEERQNQ VLEKAQSEAG LAALTQGRFQ ASPNGRAVLF VEKINKDNTL DKVFVAQLPD PEDENGLTNI VVANKGRVIE DNIGSQQLQL EKGFRYQGSP KSLELQVIEF GGYKMEIKEQ EVDERRRKLS AMPIDELLDT PGPEAAAEFQ WRLAIPIAIP LLTLIAVPLA RVNVRQGKFA KMGPAILLYL GYFGLMIAGR KALQDEVVPQ YLGMWWIHGF ALLLGLLLLI KERPTGMKFL GLFKRKQVMA
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