Gene Sfri_0876 details

Gene Information

• Locus tag: Sfri_0876
• Symbol: cobT
• ID: 4278633
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1031291
• End bp: 1032346
• Gene Length: 1056 bp
• Protein Length: 351 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638133642
• Product: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
• Protein accession: YP_749567
• Protein GI: 114562054
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG2038] NaMN:DMB phosphoribosyltransferase
• TIGRFAM ID: [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTGTCA TAGAAGCTGT TAAGTCAGAT GTTGATGCCA ATATTCAACA TAAGATTAAT 
CAAAAAACCA AACCATTAGG GGCGTTAGGG CAACTAGAAT CTTTGGCATT ACAAATTGCT 
CGGGTGCAGT ACCGCGGCGA TAAACAGTCG TTAAGCACAC CGCTGCAAAT CACTAAGCCA 
ACGATGTTAG TGTTTGCTGC TGACCATGGT ATTGCCGCTT ACGGCGTGTC GATTGCGCCA 
AGCGAAGTGA CCACTCAAAT GGTGCATAAT TTTGTCCAAG GCGGCGCGGC AATTAATGTG 
TTTTGTCGCC AAGTTGGGTT TGAGCTTGAA ATTATCGATT GCGGAATATT ACAACCGCTT 
ACAGGCCAAG CAAATGTTAT CGACCAACGC TTAGGCGCAG GGACTAAAGC AATGCATTTA 
GCGGCGGCTA TGCCACTTGA AAAAGTCGCC CAAGGTTTTG AATTTGCTCG ACAGTTGGTT 
GCTCGCCATA TTGATGTTGG GTGCAATTTA ATTGCTTTAG GTGAAATGGG TATCGGCAAT 
ACTTCTGCTG CGACTGCGGT AATGTCAGCT ATGCTCAATA TTGATGTTGA GCAATGTGTC 
GGTCGAGGCA CGGGAATAGA TGATGCAACT TTGGTGATCA AAACAAAACT CATTAACCAA 
GCACTTGATT TACATCAACA TGAGTTAGTT TCTCCTGAAG CAATTTTGGC TCACGTTGGC 
GGTTTTGAAA TAGTGCAAAT GACCGGGGCG ATACTGGCGG CTGCGGAACA AAAAATATTA 
GTGGTGATTG ATGGTTTTAT CGCTACTGCT GCAGCATTAG TTGCGGTAAA ATTATCTCCA 
CAATCAAGAG ACTATTTAGT TTTTGCTCAT GAGTCGCAAG AGCAAGGACA TAAGCTTCTG 
TTACAACAGC TACAAGCAAC ACCATTGTTG TCGCTGGGAT TAAGACTTGG AGAAGGCACT 
GGCGCTGCGT TGGCGTTACC GTTAATTCAA GCTGCGGTGA ATTTTTACAA TCAAATGGCC 
AGTTTCGATG ATGCTGGCGT TAATAATGTG GTTTAA 

 

Protein sequence

MFVIEAVKSD VDANIQHKIN QKTKPLGALG QLESLALQIA RVQYRGDKQS LSTPLQITKP 
TMLVFAADHG IAAYGVSIAP SEVTTQMVHN FVQGGAAINV FCRQVGFELE IIDCGILQPL 
TGQANVIDQR LGAGTKAMHL AAAMPLEKVA QGFEFARQLV ARHIDVGCNL IALGEMGIGN 
TSAATAVMSA MLNIDVEQCV GRGTGIDDAT LVIKTKLINQ ALDLHQHELV SPEAILAHVG 
GFEIVQMTGA ILAAAEQKIL VVIDGFIATA AALVAVKLSP QSRDYLVFAH ESQEQGHKLL 
LQQLQATPLL SLGLRLGEGT GAALALPLIQ AAVNFYNQMA SFDDAGVNNV V