Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0821 |
Symbol | |
ID | 4278774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 966001 |
End bp | 967935 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133589 |
Product | peptidase U32 |
Protein accession | YP_749514 |
Protein GI | 114562001 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAATT TAGTTAACAT TATGGTTTCT GTAGAATTGT TCACCCCTGA GGCGCCTGTA AAGCGCCAAC TTGAACTGTT AGCACCGGCT AAAAATGCTG ATTATGGCAT TGAGGCTATT CGTCATGGCG CTGATGCCGT TTATATTGGT GGTCCAGCAT TTGGCGCGCG TCATAATGCT GGCAACAGCG TTGAAGACAT CGCTCGCTTA GCTGAATTTG CTCATCGTTA TCATGCCCAA GTGTTTGTGG CGCTTAATAC CATTTTAATG GATGACGAGA TTGATAAAGC GCAAAAGCTT ATTTGGCAAC TTTATGAAGC CGGTGTCGAT GCCTTGATTG TTCAAGACAT GGGGGTTTTA CAATTAGATC TTCCACCTAT CGCGTTACAT GCGAGTACTC AAACTGATAA CCGCAGCCCA GAAAAAACAG TCTTTTTCGA ACAAGTCGGT TTTTCACAAG TCGTGTTAGC TCGTGAGTTG AATATTCCAC AAATTCGCGA CATTGCTGCT AGCACAAAGA TGAAGTTAGA GTTCTTTATT CATGGTGCGT TATGTGTCAG TTATAGCGGT TTATGTAATT TAAGCCATGC GTATTCTAAT CGCAGTGCTA ATCGCGGTGA ATGTTCACAG ATGTGTCGAT TGCCGTGTAA TTTAACTACG CGTGAAGGTG AAGTATTAGC TGAAAACAAG CATTTATTAT CACTAAAAGA CAATAACCAA ACAGATAATT TAGAAGCCTT GATTGATGCG GGTATTAGCT CATTTAAAAT TGAAGGTCGC TTAAAAGACA TTACTTACCT TAAGAATGTT ACCGCACATT ACCGCCAACA ACTGGATGCC ATTATTGCTA AACGCAATGA TTTGGAATCT ATTTCTCATG GTCGTTGCGA GTTTAATTTT ACGCCCGATC CTGATAAAAG TTTTAACCGC GGTAAAACAG ATTATTTTGT CAATGAACGT ACTGAGGCCA TTGAGCATTT TAGTTCGCCT AAGTTTATTG GTGAGAAAGT TGGCCGTATC ACCCAAGTAG GTAAAGACTT TATTAAAATC GATACCAGTG AAAGTGGCAA AGACATTCAT TTTAACAATG GTGATGGCTT ATGTTTTTTT GTTGAACATT ATGAAACCCA GCGGTTGTCT GACGATAAGC TCTCCGGCGT GCGCATTAAC CGCGCCGACG GTAATACCTT GTATTTAACT GAGGTACCTA AAGATCTTAA AATTGGCGTG ATGATGTTCC GTAACTTTGA TCATAAGTTT GAAGCTATCC TGAATAAAGA TTCTGCCACC CGTAAAATTG CTGTTGATAT GCAATTTTTT GATAGCGATG ACGGCGTTGG ATTAACCATT ACAGATATAC ACGGTATAAG TGCAACCGTT ACCTTAGCTT GCGATAAAGC TCCTGCAAAT GATCAAGCTA AAACGGCAGA AAACCTCAAA AAGCAACTCA GCAAACTTGG CAGTAGTGAT TTTGTATTGA ACAAGATTAA TTTACTGACT GAGCAAATGT GGTTTTTACC TGCATCGGTG GTTAACGAGC TGCGCCGCGA TGCGGTTAGT GCATTAATGG CCACAAGGGT GACGAGTTAC CAACGACCAG AGCGTTGGGT ACATGATAAA ACTGCGCGTT TCCCACAAAA AGCATTGAGC TTTTTATCTA ACGTGGCGAA CGAAAAAGCG AAATCGTTTT ATCATCAGCA TGGGGTGATT CAAATTGAAG ATACCTATGA GAAAAATAAC GTGTTGCATG ATGCACCGTT AATGGTGACC AAACATTGTT TACGTTACAG CTTTAACTTA TGCCCGAAAG AAGTTGAAGG GATTAAAGCC GACCCAATGT TTTTAGATGT TGGTAAAGAT AAATTGAAGT TGGTGTTTGA CTGCCATAAA TGTGAAATGA TGATTGTTGG TTCTAACCAA TTAGTGAAAC AATAA
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Protein sequence | MRNLVNIMVS VELFTPEAPV KRQLELLAPA KNADYGIEAI RHGADAVYIG GPAFGARHNA GNSVEDIARL AEFAHRYHAQ VFVALNTILM DDEIDKAQKL IWQLYEAGVD ALIVQDMGVL QLDLPPIALH ASTQTDNRSP EKTVFFEQVG FSQVVLAREL NIPQIRDIAA STKMKLEFFI HGALCVSYSG LCNLSHAYSN RSANRGECSQ MCRLPCNLTT REGEVLAENK HLLSLKDNNQ TDNLEALIDA GISSFKIEGR LKDITYLKNV TAHYRQQLDA IIAKRNDLES ISHGRCEFNF TPDPDKSFNR GKTDYFVNER TEAIEHFSSP KFIGEKVGRI TQVGKDFIKI DTSESGKDIH FNNGDGLCFF VEHYETQRLS DDKLSGVRIN RADGNTLYLT EVPKDLKIGV MMFRNFDHKF EAILNKDSAT RKIAVDMQFF DSDDGVGLTI TDIHGISATV TLACDKAPAN DQAKTAENLK KQLSKLGSSD FVLNKINLLT EQMWFLPASV VNELRRDAVS ALMATRVTSY QRPERWVHDK TARFPQKALS FLSNVANEKA KSFYHQHGVI QIEDTYEKNN VLHDAPLMVT KHCLRYSFNL CPKEVEGIKA DPMFLDVGKD KLKLVFDCHK CEMMIVGSNQ LVKQ
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