Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0783 |
Symbol | |
ID | 4278700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 919350 |
End bp | 920252 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133551 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_749476 |
Protein GI | 114561963 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACATTT CATTAAAGCA GCTCAACGTG TTTACCTGTG TTACCCAACA TAAAACCTTA ACCGCTGCAG CCAAGGCACT GTATCTGTCT AAAGCCGCGG TGAGCATGGC ACTTGCAGAA CTCGAAAAAC AATTGGGTCA CCCGCTATTT GATCGGGTCA ATAATCGCTT GGTGCTTAAT CAAGAAGGAC ACAAGTTATT ACCACTGGCC GATGAGCTGC TTAGTAGAGC AAATAATATC AGTCAATTGT TTGATGCAGA CCACGCTTTT ACGGGTCAAT TGAAAATAGG TGCCAGTGAC ACCTTAGGTA ATCATGTTGT ACCTGGGTTA TTGAGCCAAT TTAGACAGCA ACATCAACAT TTCTCACAAA GCGTGGTGAT TTCAAATTCA CGCTTAATCT GCCAAAAACT GCTGGATTAC GAGTTAGACA TTGGCTTGAT TGAGGGTAAA AGTCATCACC CAGAACTTAT CGCCACTCAG TTTAGTCATG ATGAAATGTG TATTATCGCT GCGCCTCATT TACCCATAAG TCTGCAGGCA CAATGGACGT TTAACGATTT AGAACAAAGT GAATGGATAT TACGTGAAGC AGGTTCTGGC TCGAGAGAGT TTTTTTTACG TACTATCGCG CCGCAAATAG AATCGTGGCA TGAAGTGTTT GAACTTAACA CTACTGAGGC ATTAATTAAC AGTGTCGCCG CTGGACTTGG CTTAGGATGT TTATCTGCTT TGGGGGCACA ATATGCGATT AACGATGGCC GTGTGACTCA GCTCGACTCC CCAATTAAGG GGAATCATAT TAATATGCAG CGACCGTTTT GGTTGGTGGT TCACAAAGAT AAATATCACA GCCCGCTGTT GAAAAGCTTT ATTGAGTTTT GTCATCAATG GGATAATTCA TAA
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Protein sequence | MHISLKQLNV FTCVTQHKTL TAAAKALYLS KAAVSMALAE LEKQLGHPLF DRVNNRLVLN QEGHKLLPLA DELLSRANNI SQLFDADHAF TGQLKIGASD TLGNHVVPGL LSQFRQQHQH FSQSVVISNS RLICQKLLDY ELDIGLIEGK SHHPELIATQ FSHDEMCIIA APHLPISLQA QWTFNDLEQS EWILREAGSG SREFFLRTIA PQIESWHEVF ELNTTEALIN SVAAGLGLGC LSALGAQYAI NDGRVTQLDS PIKGNHINMQ RPFWLVVHKD KYHSPLLKSF IEFCHQWDNS
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