Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0720 |
Symbol | ipk |
ID | 4278362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 846723 |
End bp | 847595 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133491 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_749416 |
Protein GI | 114561903 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.137096 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATCGA CGAACTCTCG CAAATCAGCG ATATCCAAAA GTTGGCCAGC TCCTGCAAAA CTGAATTTAT TTTTGCATGT AACTGGCCAG CGAGCCGATG GCTATCATGA ACTACAAACG CTATTTCAAT TTATTGACCA TTGTGATTAC CTTGATTTTC ATATCACAGA CACACCAGAT TTAATTCTCC ATTCTACGAT GTCCGATTCT GTCGCTGACA GCGATAACTT AATTCTTAAG GCCGCAAAAT CACTCAAGCG TTACACCCAA TATGAAGGCG GCGCGCATAT TTGGTTAGAA AAATTGTTGC CTATGGGGGG TGGTTTAGGT GGCGGATCAT CTGATGCAGC TACCACATTA GTGGCGCTAA ATGCCTTATG GAAAACCAAT ATATCACCCA ATAAACTAGC TGAAATTGGC TTAACGCTTG GTGCGGATGT CCCTGTTTTT ATTAATGGTT TATCTGCGTT CGCCGAAGGT GTCGGTGAGA AGTTGATCAC AGTACAACCA CCCGAGTCAT GGTATTTAGT TATTGTCCCT GATGTACATG TATCAACCCA GGCCGTTTTT CAACATCCTG ATTTGCCACG TAACACACCA AAATTGGATA TGAGCAGTTT AATGACTCAA CAATGGAGCA ATGATTGTCA GAAACTGGTC ACAACTAAGC ACCCTCAAGT TGCCAATGCC TTAAGCTGGC TGGTAGAATA TGCGCCGTCG AGAATGACCG GAACAGGTGC ATGCGTGTTC GGGGAATTTA CACATTCGCA ACAAGCCCTT GACGCTTTAG CCAAATTACC GGCTGATATG CAAGGTTTTG TCGCAAAGGG GATGAACAAG TCGCCATTAC AAATACGGCT TGAGCAGCTC TAA
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Protein sequence | MTSTNSRKSA ISKSWPAPAK LNLFLHVTGQ RADGYHELQT LFQFIDHCDY LDFHITDTPD LILHSTMSDS VADSDNLILK AAKSLKRYTQ YEGGAHIWLE KLLPMGGGLG GGSSDAATTL VALNALWKTN ISPNKLAEIG LTLGADVPVF INGLSAFAEG VGEKLITVQP PESWYLVIVP DVHVSTQAVF QHPDLPRNTP KLDMSSLMTQ QWSNDCQKLV TTKHPQVANA LSWLVEYAPS RMTGTGACVF GEFTHSQQAL DALAKLPADM QGFVAKGMNK SPLQIRLEQL
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