| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0719 |
|---|
| Symbol | |
|---|
| ID | 4278361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 845685 |
|---|
| End bp | 846632 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638133490 |
|---|
| Product | ribose-phosphate pyrophosphokinase |
|---|
| Protein accession | YP_749415 |
|---|
| Protein GI | 114561902 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
|---|
| TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0196966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGACA TCAAGCTCTT TGCTGGTAAC GCTACCCCAA ATCTAGCCGC CAAGATAGCC
GACCGTTTAT TTTGCAAACT TGGCGACGCA GTTGTAGGCC GTTTCAGCGA CGGTGAAATC
AGTGTTCAAA TAAACGAGAA TGTACGTGGT GCGGATGTGT TCATCATCCA ATCTACTTGC
GCACCAACTA ACGATAACCT CATGGAGCTT ATTGTAATGG TTGACGCGCT ACGTCGTGCA
TCAGCGGGTC GTATTACTGC CGTTATTCCG TACTTTGGTT ATGCTCGTCA AGACCGCCGT
GTACGCAGTG CACGTGTACC AATTACCGCA AAAGTTGTTG CAGATTTCTT GTCAAGCGTG
GGTGTTGACC GCGTATTGAC TTGTGACTTA CATGCTGAGC AAATTCAAGG TTTCTTTGAT
GTCCCTGTTG ATAACGTGTT CGGTAGCCCT GTGTTACTTG AAGACATGTT GGCAAAGAAA
TTAGAAAATC CTGTTGTTGT GTCTCCTGAT ATTGGCGGTG TAGTTCGTGC TCGTGCCGTT
GCCAAGCTAT TAGATGACTC TGACCTTGCG ATTATCGATA AGCGTCGTCC ACAAGCTAAC
GTTGCTCAAG TAATGCATAT TATTGGTGAT GTTCAAGGCC GTGATTGCAT CATCGTTGAT
GACATGATCG ATACTGGTGG CACTTTATGT AAAGCTGCTG AAGCATTGAA AGAACATGGC
GCTAACCGCG TGTTCGCTTA TGCTACTCAT CCGGTATTCT CAGGTAATGC TGCTGAAAAT
ATTGCTAACT CTGTTATCGA TGAAGTTATC GTGACAGACA CTGTGCCATT AAGCCCTGAA
ATGTTAAAAG TGGCGAAAGT GACCCAGCTA ACAATGTCTG CAGTACTAGC TGAAGCGATA
CGTCGCGTTA GTAACGAAGA GTCAATCTCT GCGATGTTCC GCCACTAA
|
|---|
| Protein sequence | MPDIKLFAGN ATPNLAAKIA DRLFCKLGDA VVGRFSDGEI SVQINENVRG ADVFIIQSTC
APTNDNLMEL IVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV
GVDRVLTCDL HAEQIQGFFD VPVDNVFGSP VLLEDMLAKK LENPVVVSPD IGGVVRARAV
AKLLDDSDLA IIDKRRPQAN VAQVMHIIGD VQGRDCIIVD DMIDTGGTLC KAAEALKEHG
ANRVFAYATH PVFSGNAAEN IANSVIDEVI VTDTVPLSPE MLKVAKVTQL TMSAVLAEAI
RRVSNEESIS AMFRH
|
|---|
| |