| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0705 |
|---|
| Symbol | leuS |
|---|
| ID | 4278748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 829380 |
|---|
| End bp | 831998 |
|---|
| Gene Length | 2619 bp |
|---|
| Protein Length | 872 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133469 |
|---|
| Product | leucyl-tRNA synthetase |
|---|
| Protein accession | YP_749401 |
|---|
| Protein GI | 114561888 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0495] Leucyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00396] leucyl-tRNA synthetase, eubacterial and mitochondrial family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.173652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCA TGGCCGGAAA TAGATTGATG CAAGAGCTAT ATAATCCCTC AGAAATTGAA
GCCTTAGTGC AAAAGCACTG GCACGAACAT AAAACCTTTG AAGTTACTGA AGATGAAAGC
AAAGAGAAAT TCTATTGTCT TTCAATGTTT CCGTATCCAT CAGGTCGTCT TCACATGGGC
CACGTCCGTA ACTACACAAT AGGCGATGTA GTGGCACGAT ATCAACGTTT GCAAGGTAAA
AATGTTTTGC AACCGATTGG TTGGGACTCA TTTGGTCTGC CTGCAGAAAA TGCCGCGATC
AATAATAAGG CGTCGCCGGC ACCGTGGACA TACGAAAATA TCGACTACAT GAAGAACCAA
CTCAAGCTAT TGGGCTTTGG TTATGACTGG AGTCGTGAAA TTGCTACCTG TACCCCTGAG
TACTATCGTT GGGAACAATG GTTCTTCACT CAGTTGTATG CCAAAGGTTT AGTGTATAAA
AAAACCTCAT CAGTAAACTG GTGTCCAAAC GATGAAACCG TACTCGCAAA CGAGCAAGTA
CAAGATGGTT GTTGCTGGCG CTGTGATACT GAAGTGATCC AGAAAGAAAT TCCTCAGTGG
TTTATTAAAA TCACTGATTA CGCTGAAGAA TTGCTTAACG ACATCGACAC GTTAGATGGC
TGGCCTGAAC AGGTTAAAGC CATGCAGCGT AACTGGATAG GTCGCAGTGA AGGGATTGAA
ATGACCTTTG CCGTTGCTGA CAGTGATGCA TCGTTTGATA TCTACACCAC TCGTCCTGAT
ACCTTAATGG GCGTGACTTA TGTTGCTATT GCAGCTGGTC ACCCATTAGC TGAACAGTCT
GCGCAAAATA ACCCTGAATT AGCCGCATTT TTAGAAGAAT GTAAAAATGC TGATACCACT
GAAGCTGCGA TGGCTTCGAT GGAGAAAAAA GGCGTCGCGA CAGGTTTACA AGCGATTCAT
CCTATTAGTG GCAAGTTAGT ACCTATTTGG GTCGCTAACT TTGTATTGAT GAATTACGGC
ACAGGTGCGG TAATGTCAGT TCCAGCTCAT GATCAACGCG ATTATGAATT TGCGACTAAA
TACCAGCTTG CGATTGAAGC GGTCATTAAG CCAGTAGATG GCGAAGTAGA CGTTAGCAAA
GAAGCTTACA CCGAAAAAGG TGTGGTGTTT AATTCGGGCG ATGCATTCCC TGAGCTAGAC
GGTTTAGACT TCCAAGCAGC TTTTGAAGCT ATTGATGCTA GATTAACCGC AGAAGGTAAA
GGCAAACGCC AAGTCAATTA TCGTTTACGC GACTGGGGTG TTTCTCGTCA GCGTTACTGG
GGTGCTCCTA TCCCGATGGT GACCCTCGCC GATGGTACTG TTGTGCCAAC GCCTGAAGAT
CAACTGCCTG TTATTTTGCC AGAAGATGTG GTGATGGACG GTATTCAAAG TCCAATTAAA
GCCGATAAGG CTTGGGCCGA AACCACAGTC AACGGTCAGC CAGCAACACG CGAAACAGAT
ACCTTTGATA CCTTTATGGA ATCATCTTGG TACTACGCAC GTTACTGTAG CCCTCACGCA
GACGAAATGT TAGATCCTGC TAAAGCTAAC TACTGGTTAC CAGTAGATCA GTACATTGGC
GGTATCGAAC ATGCTTGTAT GCATTTGTTG TATTTCCGCT TTTTCCATAA GTTGCTGCGT
GACGCAGGCT TAGTCAACAG TGATGAGCCC GCAAAGCAGT TACTGACTCA AGGCATGGTA
TTAGCAGATG CTTATTACTA CACCAACGAA AAAGGCGCCC GAGTTTGGGT ATCACCTTTA
GAAGTGACTG TGGTAGAAAA AGACGACAAA GGCCGCATCA TTAAAGCGAT AGACAATCAA
GGTCATGAAC TGGTTTACAC CGGCATGAGT AAGATGTCTA AATCGAAAAA TAACGGTATC
GATCCACAAG TCATGGTTGA AAAATACGGT GCTGATACCG TACGTTTATT CATGATGTTT
GCCTCGCCAC CAGAATTAAC CCTGGAATGG CAAGAGTCAG GCGTTGAAGG AGCACATCGC
TTCATTAAAC GTTTCTGGAA ATTGGCTAGC GATCATGTTG CTGCAGGTAA AACTGAAGCA
TTAGATACCA GCAAATTAAA TGCCGATCAA AAAGCATTGC GCCGTGAATT ACATAAGACC
ATTGCCAAAG TCAGCGATGA CATTGCACGT CGTCAAATGT TTAACACCGC AGTAGCCTCA
GTAATGGAAC TAATGAACCA TTTACTGAAA GCCTCACAAG AAACGGCTCA AGACCGAGCG
TTACTTGCTG AAGCTTTGTC TGCTGTAACG CGTTTGCTTT ACCCTATTGT TCCGCATATG
ACGTTTACGT TATGGAATGA GTTAGGTAAC GAAGGCGACA TTGAAGATAG CCGTTGGCCT
GAAGTCGATG AGTCTGCGTT AGTCGAAGAC AGCAAGCTCA TTGTGGTACA AGTAAACGGA
AAGGTTCGCG CAAAAATTAC TGTTGCTGCT GATGCATCAA AAGAAGATGT AGAAGCATTA
GGCATGAGTG ATGAGCACGT ACAAAAACAC ACTGAAGGGT TAACGGTTCG TAAAGTCATT
TACGTGCCCG GCAAACTATT AAGTATTGTT GCTAACTAA
|
|---|
| Protein sequence | MGGMAGNRLM QELYNPSEIE ALVQKHWHEH KTFEVTEDES KEKFYCLSMF PYPSGRLHMG
HVRNYTIGDV VARYQRLQGK NVLQPIGWDS FGLPAENAAI NNKASPAPWT YENIDYMKNQ
LKLLGFGYDW SREIATCTPE YYRWEQWFFT QLYAKGLVYK KTSSVNWCPN DETVLANEQV
QDGCCWRCDT EVIQKEIPQW FIKITDYAEE LLNDIDTLDG WPEQVKAMQR NWIGRSEGIE
MTFAVADSDA SFDIYTTRPD TLMGVTYVAI AAGHPLAEQS AQNNPELAAF LEECKNADTT
EAAMASMEKK GVATGLQAIH PISGKLVPIW VANFVLMNYG TGAVMSVPAH DQRDYEFATK
YQLAIEAVIK PVDGEVDVSK EAYTEKGVVF NSGDAFPELD GLDFQAAFEA IDARLTAEGK
GKRQVNYRLR DWGVSRQRYW GAPIPMVTLA DGTVVPTPED QLPVILPEDV VMDGIQSPIK
ADKAWAETTV NGQPATRETD TFDTFMESSW YYARYCSPHA DEMLDPAKAN YWLPVDQYIG
GIEHACMHLL YFRFFHKLLR DAGLVNSDEP AKQLLTQGMV LADAYYYTNE KGARVWVSPL
EVTVVEKDDK GRIIKAIDNQ GHELVYTGMS KMSKSKNNGI DPQVMVEKYG ADTVRLFMMF
ASPPELTLEW QESGVEGAHR FIKRFWKLAS DHVAAGKTEA LDTSKLNADQ KALRRELHKT
IAKVSDDIAR RQMFNTAVAS VMELMNHLLK ASQETAQDRA LLAEALSAVT RLLYPIVPHM
TFTLWNELGN EGDIEDSRWP EVDESALVED SKLIVVQVNG KVRAKITVAA DASKEDVEAL
GMSDEHVQKH TEGLTVRKVI YVPGKLLSIV AN
|
|---|
| |