Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0667 |
Symbol | |
ID | 4278188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 778798 |
End bp | 779772 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133426 |
Product | pseudouridine synthase, RluA family protein |
Protein accession | YP_749365 |
Protein GI | 114561852 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0233551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACAAG AGATTAATCT AAAAAGCGAG ATAACAGCAA TACAAACCGG TCTGAGATTA GACCAAGCAT TAGCTGGTTT GTTCCCTGAC TACTCGCGCA CACGCATCAA GGAATGGATC CTATCTGGTG CAATTACTAT TGACGGTATC ACAGTCGACA AGCCACGGGA AAAGGTTTTC GAGTCTCAGT TGGTAGAAGT TACGGCAACA CTTGAAGAAG AAGTGAGTGC TAAAGCGCAA AATATCGACT TAAATATTGT TTATGAAGAC GACCATATTC TTGTCATTAA CAAGCAAGCT GGTTTAGTTG TTCATCCTGG TGCTGGTAAC GCAGACGGCA CATTGATGAA TGCTTTATTA TATCATTGTC CAGATATTGA ACATGTACCA AGAGCGGGTA TTGTTCATCG TTTAGATAAA GACACTACAG GGCTAATGGT TGTCGCTAAA ACAGTTGAGG CACAAACACA TTTGGTTGCC GCATTACAGG CGCGTGATAT TGTTCGTGAG TATGAAGCGA TTGTATTAGG CACTATGACG GCTGGTGGCA CGGTTGATGA ACCTATTGAA CGTCACGCAA CTAGACGTAC TCAAATGGCC GTTATCCATG GTGGTCGTCC ATCGGTGACT CATTATCGAG TGTCTGAAAA GTTCCGAGCT CACACGCGTT TACGTTTGCG TCTGGAATCT GGTCGTACTC ACCAAATTCG TGTTCATATG GCACACATTG GCCATGAGTT GGTTGGCGAT CCGGTTTATG GTGGTCGTCC TCGTCCGCCT AAATCTGCTA GCCCAGAGTT TTTTGAATTA CTCAAAAACT TTAAGCGCCA AGCTTTACAC GCAGTGCGTT TAGAGCTTGC TCATCCATTT ACCTGTGAAA TCATGACTTG GCATGCGCCG ATCCCTGATG ACATGGTTGA GCTGACAAAA GCACTACGAG TCGATACTGA GCTTAATCCG ATAGTGTATT TATAA
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Protein sequence | MTQEINLKSE ITAIQTGLRL DQALAGLFPD YSRTRIKEWI LSGAITIDGI TVDKPREKVF ESQLVEVTAT LEEEVSAKAQ NIDLNIVYED DHILVINKQA GLVVHPGAGN ADGTLMNALL YHCPDIEHVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQARDIVRE YEAIVLGTMT AGGTVDEPIE RHATRRTQMA VIHGGRPSVT HYRVSEKFRA HTRLRLRLES GRTHQIRVHM AHIGHELVGD PVYGGRPRPP KSASPEFFEL LKNFKRQALH AVRLELAHPF TCEIMTWHAP IPDDMVELTK ALRVDTELNP IVYL
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