Gene Sfri_0648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0648 
Symbol 
ID4278604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp752197 
End bp753216 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content44% 
IMG OID638133405 
Producterythrose 4-phosphate dehydrogenase 
Protein accessionYP_749346 
Protein GI114561833 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0524995 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTCGAG TTGCAATTAA TGGTTATGGC CGGATTGGCC GCTCAATACT TCGTGCATTG 
TACGAATCTG GAAAACGTCA ACAAATCCAA ATTGTGGCGA TCAATGAGTT GGCAAAGCCA 
GAAGCCATTT GTCATTTAAC CCAATACGAC ACGACTCATG GTCGTTTCAA GCATACCGTT 
AAGCTAAATG GTGATCAGTT GCTTATCGGC GATGACAGCA TTTTGTTACT CAATCAACCT 
GATGCTAATT TATTGCCTTG GGCAGAGCTT GATATCGATA TTGTTTATGA GGCCACCGGC 
AGCTTAATTG ATCGTCAAGC TTGCGAAGCA CACATTCATG CAGGTGCTAA GCAAGTGCTG 
ATTAGCCATC CTTCTTCAGC AGATGTTGAT GAGACCATTG TATATGGTGT GAATCATGAT 
TTGTTGCGCG CAGAACATAC CGTTATTTCT AATGCATCTT GCACTACCAA TTGTATTGTC 
CCGGTTATCG ACGTATTGGA TAAGCATTTT GAAGTTAAGA GTGGCGCCAT TACCACTATT 
CACTCGGCGA TGAACGATCA ACAAGTGATC GATGCTTATC ATGATGATTT ACGCCGAACT 
CGCGCAGCGG GCCAATCTAT TATTCCGGTA GACACAAAAT TAGCGCGAGG CATTGAGCGT 
ATTTTGCCGC ACATGAAAGA CAAGTTTGAG GCGATTTCTG TTCGAGTGCC AACCATAAAT 
GTGACCGCGA TCGACCTGTC AGTCACGTTA GAGAAAAAAG TCAATATTGA GCAAATTAAC 
AGTGTGCTGC AACGTGCGTC AAACGGCAGT TTTAATGGTA TTTTAGGTTA TACTGACGAG 
CCTCTGGTAT CGTGTGATTT TAACCACGAT CCACGTTCGA GTATTGTAGA CGGAACCCAA 
ACGCGTGTCA GTGCCGGCCA CTTGGTCAAA TTATTATTAT GGTGCGACAA CGAATGGGGT 
TTTGCCAACC GTATGCTTGA TACTAGCTTA GCGATGATTC AAGCAAAGTT AGATCGGTAA
 
Protein sequence
MIRVAINGYG RIGRSILRAL YESGKRQQIQ IVAINELAKP EAICHLTQYD TTHGRFKHTV 
KLNGDQLLIG DDSILLLNQP DANLLPWAEL DIDIVYEATG SLIDRQACEA HIHAGAKQVL 
ISHPSSADVD ETIVYGVNHD LLRAEHTVIS NASCTTNCIV PVIDVLDKHF EVKSGAITTI 
HSAMNDQQVI DAYHDDLRRT RAAGQSIIPV DTKLARGIER ILPHMKDKFE AISVRVPTIN 
VTAIDLSVTL EKKVNIEQIN SVLQRASNGS FNGILGYTDE PLVSCDFNHD PRSSIVDGTQ 
TRVSAGHLVK LLLWCDNEWG FANRMLDTSL AMIQAKLDR