| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0647 |
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| Symbol | |
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| ID | 4278603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 749965 |
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| End bp | 752007 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133404 |
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| Product | transketolase |
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| Protein accession | YP_749345 |
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| Protein GI | 114561832 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000464673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCAC AATTGCCCGT TAGACCTTAC AAACAAGCAG GAGAGAGCAT GTCATCTCGT
AAAGTACTCG CTAACGCTAT TCGCGCCCTA AGTATGGATG CGGTTCAAAA AGCCAATTCT
GGTCATCCAG GTGCCCCAAT GGGGATGGCT GATATCGCCG AAGTGCTATG GAATGATTTT
CTAAAGCACA ATCCAACTAA TCCTAACTGG GTCGATCGCG ATCGTTTTGT TCTGTCAAAC
GGTCATGGCT CTATGCTTAT CTACTCTTTA CTGCATTTAT CTGGTTATGA ATTGCCTATC
GAAGAGCTAA AGCAATTCCG TCAGTTGCAT TCTAAAACAC CTGGTCATCC TGAATATGGT
TATACCCCTG GTGTTGAAAC CACAACGGGT CCTTTAGGTG CTGGTATCAG TAACGCAGTT
GGTATGGCGA TTGCTGAAAA AACCTTAGCG GCTCAGTTTA ACCGTCCTGG ACACGACATT
GTGGATCACT TCACATACTG TTTCTTAGGC GATGGTTGTT TAATGGAAGG GATTTCTCAC
GAAGTCAGTT CATTAGCTGG AACATTAGGC CTTGGTAAGT TAGTGGCATT TTGGGATGAC
AACGGTATTT CTATCGATGG TCATGTTGAA GGTTGGTTCA CTGACGATAC TCCTAAGCGT
TTTGAAGCCT ATGGCTGGCA TGTTGTTGCT GATGTAGATG GTCATAATCC AGATGCTATC
CGTGCAGCAA TTGAAGAAGC TAAATCTGTA ACAGATAAGC CATCAATGAT TTGCTGTAAA
ACCATTATTG GTTTTGGTTC GCCTAACAAA TCGGGTAGCC ATGATTGTCA TGGTGCACCA
TTAGGTGATG CTGAAATTGC AGCAGCTCGT GAGTTCTTAA ACTGGCCACA CGCTCCTTTT
GAAATCCCAT CTGATGTGTA TGCTGGTTGG GATGCAAAAC ATAAAGGTGT TGCTAACGAG
TCATTATGGA ATGACAAGTT TTCGGCTTAC CAAGCAGCGT TCCCAGAACT TGCTGCAGAA
TATGAACGTC GCGTATTAAA AGGTGATTTA CCAGCTGATT TTGAAGCTAA AGCACAAACC
TTTATTCAAG AAAGCCAAGA TAAAGCCGAA GGTATTGCGA GCCGTAAAGC GTCTCAAAAT
GCCATTGGTT TCTTTGGTGC TATGTTGCCT GAATTACTTG GTGGTAGCGC AGACTTAGCC
GGCTCTAACT TAACGCTTTG GTCTGGTTCA AAAGGTATTC AAGACGATCC TGCCGGTAAC
TACATCTATT ACGGTGTTCG TGAATTCGGT ATGAGCGGTA TTATGAACGG CGCGTCGTTA
CATGGTGGTT TTATTAACTA TGGCGCAACC TTCATGATGT TCATGGAGTA CGCACGTAAC
GCGGTACGTA TGTCAGCATT AATGGGCATT CAAAACATTT TCGTTTATAC CCATGACTCT
ATTGGTCAAG GCGAAGATGG CCCTACTCAT CAGCCGGTTG AGCAATTAGC TAACTTACGT
TTAACGCCTA ATATGGCAGT ATGGCGTCCA TGTGATGCAG CGGAAACTGC TGTATCTTGG
AAAGCGGCCA TTGAACGTCG TGATGCACCT ACATCATTAA TCTTTAGTCG TCAGGGTCTT
AAAGCCCAAG CGCGTACCGC TGAGCAATTA GCTAACGTAG CTAAAGGTGG TTATGTACTG
TCTGATTGCC AAGGCACTGC TGATGTGATT TTGATTGCAA CAGGTTCAGA AGTGCAATTA
GCTATGGATT CTGCAGTAGA GCTAACCAAA CTAGGTCAAA AAGTACGGGT AGTGTCTATG
CCTTCTACTA CCGAGTTTGA TAAGCAAGAT GCAGCATATA AAGAATCGGT ACTACCAAAA
GGAGTCACTA AACGTGTTGC TGTTGAAGCG GCACACGCTG ACTTCTGGTA CAAATATATT
GGTTTTGATG GTGCTGTAGT GGGTATGACC ACCTTTGGTG AGTCTGCTCC TGGTGGTGAT
TTACTTAAAC ATTTCGGCTT CACTGTTGAT AATGTAGTAA AAACTGTCCA ATCTTTAGGA
TAA
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| Protein sequence | MASQLPVRPY KQAGESMSSR KVLANAIRAL SMDAVQKANS GHPGAPMGMA DIAEVLWNDF
LKHNPTNPNW VDRDRFVLSN GHGSMLIYSL LHLSGYELPI EELKQFRQLH SKTPGHPEYG
YTPGVETTTG PLGAGISNAV GMAIAEKTLA AQFNRPGHDI VDHFTYCFLG DGCLMEGISH
EVSSLAGTLG LGKLVAFWDD NGISIDGHVE GWFTDDTPKR FEAYGWHVVA DVDGHNPDAI
RAAIEEAKSV TDKPSMICCK TIIGFGSPNK SGSHDCHGAP LGDAEIAAAR EFLNWPHAPF
EIPSDVYAGW DAKHKGVANE SLWNDKFSAY QAAFPELAAE YERRVLKGDL PADFEAKAQT
FIQESQDKAE GIASRKASQN AIGFFGAMLP ELLGGSADLA GSNLTLWSGS KGIQDDPAGN
YIYYGVREFG MSGIMNGASL HGGFINYGAT FMMFMEYARN AVRMSALMGI QNIFVYTHDS
IGQGEDGPTH QPVEQLANLR LTPNMAVWRP CDAAETAVSW KAAIERRDAP TSLIFSRQGL
KAQARTAEQL ANVAKGGYVL SDCQGTADVI LIATGSEVQL AMDSAVELTK LGQKVRVVSM
PSTTEFDKQD AAYKESVLPK GVTKRVAVEA AHADFWYKYI GFDGAVVGMT TFGESAPGGD
LLKHFGFTVD NVVKTVQSLG
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