Gene Sfri_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0628 
Symbol 
ID4278428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp732034 
End bp733089 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content42% 
IMG OID638133385 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_749326 
Protein GI114561813 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.421045 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATTATC AAAATGACGA TATTCGTATC GATGAAATAA AAGAATTGCT GCCACCCATT 
GCGATTCTAG AACGATTTCC GGCAACCGAA CATGCATCAT CAACTGTTTT TAATGCGCGT 
AACAGTATTC ATCAAATTTT AGCCCGTAAA GATGATCGCT TATTAGTGGT GATTGGCCCT 
TGCTCAATTC ACGATCCTGT TGCCGCCTTA GAGTATGGTC AACGCTTAGT TAAATTGCGG 
GAACAGTATA AAAATCAGCT TGAAATTGTC ATGCGAGTGT ATTTTGAAAA GCCGAGAACG 
ACAGTCGGTT GGAAAGGGTT AATTAATGAT CCTTATATGG ATAACAGTTT TCAATTAAAT 
GATGGTTTAC GGACCGCTCG TAAATTACTT GTCGATTTAA ATGACTCAGG AATGCCAACA 
GCAGGTGAGT TTTTAGATAT GATCACACCT CAATATGTTG CTGACATGAT GTGTTGGGGC 
GCCATCGGCG CACGTACTAC CGAATCTCAA GTACACCGTG AATTATCATC GGGGCTGTCT 
TGTCCTGTAG GATTTAAAAA TGGTACCGAC GGAACCATTA AAGTGGCTAT TGATGCCATT 
GGAGCCGCGA GTGCGCCACA TCATTTCTTG TCGGTTACTA AGTTTGGTCA TTCGGCCATA 
GTGTCAACTA AAGGGAATCC AGATTGCCAT ATCATTTTAC GTGGCGGTCG AGCACCTAAC 
TATAGTGCCG AACATGTGTC TGATATCGCC AAACAGCTTG CTAAGTCAGG CTTAACTGAC 
AATATTATGA TTGATTTTAG CCATGCTAAT AGTAGTAAAG ATTATAAAAA GCAGATGCTG 
GTTGCCGATG ATGTCGCTGG GCAAATATCT CAAGGTAATC ATGCTATTTT TGGTGTGATG 
GTTGAAAGTC ATTTAGTTGA AGGACGCCAA GACCTCATTG AAGGTAGTGA ATTGTGCTAC 
GGACAGAGCG TAACGGATGC TTGTATTGGT TGGGATGACA CAGAGTCACT TTTAGCAACA 
CTGAATAAGA GTGTACTTGA CCGACGTCAA GCCTGA
 
Protein sequence
MHYQNDDIRI DEIKELLPPI AILERFPATE HASSTVFNAR NSIHQILARK DDRLLVVIGP 
CSIHDPVAAL EYGQRLVKLR EQYKNQLEIV MRVYFEKPRT TVGWKGLIND PYMDNSFQLN 
DGLRTARKLL VDLNDSGMPT AGEFLDMITP QYVADMMCWG AIGARTTESQ VHRELSSGLS 
CPVGFKNGTD GTIKVAIDAI GAASAPHHFL SVTKFGHSAI VSTKGNPDCH IILRGGRAPN 
YSAEHVSDIA KQLAKSGLTD NIMIDFSHAN SSKDYKKQML VADDVAGQIS QGNHAIFGVM 
VESHLVEGRQ DLIEGSELCY GQSVTDACIG WDDTESLLAT LNKSVLDRRQ A