Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0579 |
Symbol | rumB |
ID | 4278520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 671190 |
End bp | 672323 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133337 |
Product | 23S rRNA methyluridine methyltransferase |
Protein accession | YP_749278 |
Protein GI | 114561765 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAATGTG ATTATTTTGA GCGTGGCGAT TGTTTGTCAT GCCGCAATAT TCAACTACCT ATGGTTGAGC AAGTGAGTGT AAAGCAACAA CAGTTAATCG ATTTGTTTCG TGGCATTTCA GTTAAGCAAT GGCTAGCGCC GATATTAAGC GCAGAATCAG GTTTTCGTAA TAAAGCCAAA ATGGTCGTTT TAGGTGCCGC TCACAAACCT ATTTTAGGTT TGGTTAATCC TAAAGGGGAG CCGGTCAGTC TATGCGACTG TTCGTTATAC CCTAAAGATA TGCAATTATT GTTACACCGT TTAGAACGAT TTGTGCAGCA AGCTGGTATA CCGCCTTATC GGGTCGATAA AAGCAAAGGC GAGCTAAAAT TTATTTTACT GACTCGCAGC CAAAGTAGTG GCCAGTTTAT GCTGCGTTTT GTATTACGCA GTGATCAAGC CATCGTGAGA ATTGAACGAG AATTACCTCA ATTATTACAA GAGTTTCCCG AAATTACCTT AGTCTCGGCC AATATTCAGC CAATCCACAT GGCGATTCTT GAAGGCGAAA GGGAAATATT TTTAACGGAA ACGACACGAT TAGAAGAACA ACTTAATAAT GTACCGTTGT TTATACGGCC AAAAAGCTTT TTTCAAACGA ATCCTGAAGT CGCCGCCCAG TTGTATCAAA TAGCGAGGGA GTGGGTTACT GAATTCAAAC CGAACTATAT TTGGGATCTA TTTTGTGGCG TCGGTGGATT TGGGCTGCAT TGTGCTGACA GCAATATCCG TTTAACTGGG ATTGAGATCG AATCTGAAGC AATAGAATGT GCCATCTTGT CAGCAACTAA ACTAGGGTTT ACCCAAGTGG ATTTTAGCGC ACTTGATTCA ACTCATTTTG CCAAAGGACA ATCTGCTCAA GATAAACCAG ATCTTATTAT TGTAAATCCA CCTCGGCGCG GATTAGGAAA ATCATTATGC GACTCACTGA GTGAGTTTGC ACCTAAAGCA ATCGTGTATT CTAGTTGTAA TCCACACACC TTAATGAGCG ATTTAGAGTA CATTACGGGT TATCAAATCA CCAAAGTTCA AATGTTTGAT ATGTTTCCTC ATACTGATCA TTTTGAAGTA TTGGTTATGC TAGAACAGCT GTAA
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Protein sequence | MKCDYFERGD CLSCRNIQLP MVEQVSVKQQ QLIDLFRGIS VKQWLAPILS AESGFRNKAK MVVLGAAHKP ILGLVNPKGE PVSLCDCSLY PKDMQLLLHR LERFVQQAGI PPYRVDKSKG ELKFILLTRS QSSGQFMLRF VLRSDQAIVR IERELPQLLQ EFPEITLVSA NIQPIHMAIL EGEREIFLTE TTRLEEQLNN VPLFIRPKSF FQTNPEVAAQ LYQIAREWVT EFKPNYIWDL FCGVGGFGLH CADSNIRLTG IEIESEAIEC AILSATKLGF TQVDFSALDS THFAKGQSAQ DKPDLIIVNP PRRGLGKSLC DSLSEFAPKA IVYSSCNPHT LMSDLEYITG YQITKVQMFD MFPHTDHFEV LVMLEQL
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