Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0551 |
Symbol | |
ID | 4278719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 636730 |
End bp | 637614 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133309 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_749250 |
Protein GI | 114561737 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.215454 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATCC CAATCAAGAC CTTACAGATC TTTCTCACCA TAGTGGAAAC CAAAAACTTT ACCCGTGCGG CACAAAAATG TTTTATGACC CAACCGACAT TGACAAAAAC CATTCAACGT TTAGAAGACA ATATGGGTGA GCAATTGTTA ATAAGGAATA ATCAAACAGT AGAATTAACC CAAGCAGGAC AATTGTTTGA GCAAAGCGCA CGGGAGATTT TAGGTCATTG GCACCGACTA CAAGAAGGTA TTAACAATCT CAGTGGCTTA AAATCAGGAC GATTACGACT TGGAGTTTGC CCTATGATGA GTAGTTTAAT CACTCCTTTG CTGACCGATT ATCGACAAAA ATATCCCGGA ATCGAATTAC AGATGTACGA GTATGGCGGA TTTGGTTGTG AGCAAGCACT ATTGAGCAAC AGTCTAGATA TTGCCTTTAC TGCACTTCCG ACAACGCATA AAACAGAGTT AGCAAGCCAA CCTCTGACTA AATACCCTTT ACTGGCTTGC TTACCAGAAG GCCATCCACT TGCTGACAAT GCTGACATAC GCTGGCAAGA CTTTGAATCT TATCCTTTCA TTCTTTACAA CGAAGACTTT TCATTAGCAA AGTTAATTAA TTATTTAAGT CGTAAAGTTG GCGTACATCT CAACATCGCC TTTCGAACAG GTCAGTGGGA CTTTTTAGCC GCAATGGTTG AAGCTAACTT GGGTGTCGCG ATTTTGCCCG AACCCATTTG CCAACGGTTA ACCAATAGCA AACTGGTATT TAAACCGATG CAACCGGCAA TGACCTGGGA TCTGGCATTA ATATGGCGAG AGAATCTACC GTTAACCCCA CCAGCCCAAG CACTATTAAC GCTCAGCAGA AACAGTCATG AGTAA
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Protein sequence | MNIPIKTLQI FLTIVETKNF TRAAQKCFMT QPTLTKTIQR LEDNMGEQLL IRNNQTVELT QAGQLFEQSA REILGHWHRL QEGINNLSGL KSGRLRLGVC PMMSSLITPL LTDYRQKYPG IELQMYEYGG FGCEQALLSN SLDIAFTALP TTHKTELASQ PLTKYPLLAC LPEGHPLADN ADIRWQDFES YPFILYNEDF SLAKLINYLS RKVGVHLNIA FRTGQWDFLA AMVEANLGVA ILPEPICQRL TNSKLVFKPM QPAMTWDLAL IWRENLPLTP PAQALLTLSR NSHE
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