| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0503 |
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| Symbol | |
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| ID | 4278583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 569378 |
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| End bp | 570421 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133260 |
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| Product | porin |
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| Protein accession | YP_749202 |
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| Protein GI | 114561689 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00290192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CCTTAATCTC TGCATCGGTA GCATCTGTAC TTACATTAGT TTCTTTCGCT
ACACTTGCTG AAGGCCCAAG TTTCTATGGT CGTTTAGATT TAGCAGTATC GAATTCTGAT
CAAGGTGCCA CTACTCAAAA CCGTAAAGAA GGCACAGTAT TAGAAAACAA CTTTTCTAAC
TTGGGTGTTA AAGGTAGCGA GAAATTTGCT AACGGTATCG AACTGTTATA CCAAATGGAA
TTCCAAGTTG AAAATACTAC TCAAACTGAA GGTAAGAATG GCAGTGACGA AGTTGTATTT
AAAGCACGTA ACACATTCTT AGGTTTAAAA AGTGACGCTG GTACTGTGTT AGTAGGCCGT
AACGATACGG TATTTAAACA GTCTGAAGGT GGCATCGATT TATTCGGTAA CTTTAACGCC
GATATCGATC GTATGATTGG CGGCCAGTTA CGTAAAGCTG ACGGTCTTTG GTACTACTCA
CCTGTTATTG GTGGTTTAGT CACATTAAAC GCGACTTATT TAATGGAAGA CAACTACACA
GATGATGCTG GTAAAGAATC ATATGATGAT CAATATGCAT TAAGTGCAAC TCTTGGTGAT
AAAGGTCTTA AAGCACACCC TTACTACGTA GCTGCAGCTT ATAACACTAT TGGTGGCATT
GATGCTTACC GTGGTGTGGC ACAAGTTAAG CTAGGTGAGT TCAAGCTTGG TGGTTTATAC
CAAAACACTG AAAGCCAAAC ATCTGATCAA GAAGGTGATT CTTTCTTCCT TAACGTATCT
TACAACCTAA ACGGCGTAAA CTTAAAAGCT GAATACGGTC AAGATGAAGC TGGTTTTGGT
AGCTACTACA AAAATATTAA AGAAGCGACT GGTACAGACG TAAACATCAC TCAAATTACT
GTGGGTGCTG ACTACCGTAT ATCTAAGTCA ACGTTAGTTT ATGGTCACTA TGCTATGTAT
GAAGGCGACC ATAAAGTTGG TACTGCTACA GTTGATTTAG AAGATGACAA CATCTTCACT
GTCGGTGCTC GTTACGACTT CTAA
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| Protein sequence | MKKTLISASV ASVLTLVSFA TLAEGPSFYG RLDLAVSNSD QGATTQNRKE GTVLENNFSN
LGVKGSEKFA NGIELLYQME FQVENTTQTE GKNGSDEVVF KARNTFLGLK SDAGTVLVGR
NDTVFKQSEG GIDLFGNFNA DIDRMIGGQL RKADGLWYYS PVIGGLVTLN ATYLMEDNYT
DDAGKESYDD QYALSATLGD KGLKAHPYYV AAAYNTIGGI DAYRGVAQVK LGEFKLGGLY
QNTESQTSDQ EGDSFFLNVS YNLNGVNLKA EYGQDEAGFG SYYKNIKEAT GTDVNITQIT
VGADYRISKS TLVYGHYAMY EGDHKVGTAT VDLEDDNIFT VGARYDF
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