| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0500 |
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| Symbol | |
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| ID | 4278580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 566627 |
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| End bp | 568258 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133257 |
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| Product | EmrB/QacA family drug resistance transporter |
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| Protein accession | YP_749199 |
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| Protein GI | 114561686 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.667013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCAGT CAGCCACTGA GGCAGATGCA TCGCAAGTCG GCCCTGTAAG TACTGTGGAT
GATAAACCGA CCGGTTATCA GCGCGGTAGC ACACGTTCTT GGATTGCTGT TGCTGGCGGT
TTAATCGGTG CTTTTATGGC GATTTTGGAT ATTCAAATCA CCAACGCGTC GATGAAAGAG
ATTCAGGGCA GTTTAGGGGC GACGCTAGAA GAGAGTAGCT GGATTGCCAC TGCTTATTTA
GTAGCCGAGA TGATTGCCAT TCCTTTATCT GGTTGGTTAA GTACTGGTTT ATCTACTCGT
CGTTACTTAC TGTGGACTAC TGCTGCCTTT ATCGTTGCCT CTGTATTGTG CTCAATGTCT
TGGAACCTTG AGTCGATGAT CGCTTTTCGT GCCTTGCAGG GTTTTTTTGG CGGGGCATTA
ATTCCGTTAG CTTTTCGATT AATTCTTGAG TTTTTACCCG ACGACAAACG CGCCATGGGT
ATGGCTCTGT TTGGAGTAAC CGCAACATTT GCGCCTTCTA TTGGGCCAAC ATTAGGAGGT
TGGTTAACCG AACAATTTAG CTGGCACTAT TTATTTTATA TTAATGTTCC GCCAGGTTTA
TTAGTGATGG CGATGTTGGC TTATGGTTTA GAGCGCAAAC CGATTATTTG GGACAAGTTA
AAAGACGCCG ATTATTCTGG CATTGTTACC ATGGCGTTGG GTATGGGCTG TTTAGAAGTC
GTGTTAGAAG AGGGCAATCG TAAAGACTGG TTTGGGTCAG ATCTTATTCG TAATCTTGCC
ATTATTGCCG CGGTTAATAT CAGTTTATTT ATTTGGATCC AATTACGTAA AGCTCAGCCA
TTAGTGAATA TTCGTCTGCT TGCGCAGCGA GATTTCGCTT TATCCACTGT GGCGTATTTC
TTACTGGGTA TGGCGTTGTT TGGGGCGATC TACATGATCC CGCTGTATTT ATCACAAATT
CATGATTATA CCCCGTTAGA AATTGGTGAA GTCATTATGT GGATGGGCTT CCCGCAGTTA
CTCGTACTGC CATTAGTGCC TAAATTAATG CAGAAGTTTG ATCCGCGATA TTTGGCAGCA
CTTGGATTTG CTTTATTTGC GACCAGCTAT TATATGAATA GCCATATGAC CATTGATTTC
GCAGGCGATC AGATGATTGC TTCGCAAATC GTACGGGCGT TAGGGCAACC GTTTATTTTA
GTACCTATTG GTATTTTGGC GACAATGCAT CTTCAAGCAC ATGAAAATGC CTCTGCATCG
ACGGTACTCA ATGTGATGCG AAATTTAGGT GGGGCTTTTG GTATCGCGCT GGTTGCAACC
TTAACTGATA ATTTAGCCCG AGTTCATTTG GCCCATATTA AAGAAACGTT GCCGACTGTC
AGCTCCCAAG CTTACAACTA TATTCAGCAT ACCAGTTCGA TATTGCAAAC TGCGGGTTCT
GATGCGGTGA GTGCTAACTC ACAAGCCTAT GCTTTACTTG CTAAAAATAT GTCACAACAA
GCATATATAC AAGCCTATAA TGATGTGTTT TTTATTATGG CATGTTTTCT ATTTATTGCG
GTTGTGGCGG TTTTATTGAT CCGTAAACCT GCGGTGAAAA GTGATACAGA TCAACCTAAT
GAAATGCATT AA
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| Protein sequence | MNQSATEADA SQVGPVSTVD DKPTGYQRGS TRSWIAVAGG LIGAFMAILD IQITNASMKE
IQGSLGATLE ESSWIATAYL VAEMIAIPLS GWLSTGLSTR RYLLWTTAAF IVASVLCSMS
WNLESMIAFR ALQGFFGGAL IPLAFRLILE FLPDDKRAMG MALFGVTATF APSIGPTLGG
WLTEQFSWHY LFYINVPPGL LVMAMLAYGL ERKPIIWDKL KDADYSGIVT MALGMGCLEV
VLEEGNRKDW FGSDLIRNLA IIAAVNISLF IWIQLRKAQP LVNIRLLAQR DFALSTVAYF
LLGMALFGAI YMIPLYLSQI HDYTPLEIGE VIMWMGFPQL LVLPLVPKLM QKFDPRYLAA
LGFALFATSY YMNSHMTIDF AGDQMIASQI VRALGQPFIL VPIGILATMH LQAHENASAS
TVLNVMRNLG GAFGIALVAT LTDNLARVHL AHIKETLPTV SSQAYNYIQH TSSILQTAGS
DAVSANSQAY ALLAKNMSQQ AYIQAYNDVF FIMACFLFIA VVAVLLIRKP AVKSDTDQPN
EMH
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