| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0454 |
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| Symbol | |
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| ID | 4278152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 519783 |
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| End bp | 520745 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638133212 |
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| Product | putative TIM-barrel protein, nifR3 family protein |
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| Protein accession | YP_749154 |
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| Protein GI | 114561641 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000230608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAATTG GCCCGTATCA ACTGTCTAAT CAGCTGATTG TGGCACCAAT GGCAGGTGTC
ACCGATCAGG CCTTCCGAAA TCTCTGTTTA CGCTATGGCG CAGCTTTAGC CGTATCAGAA
ATGCTTTCAT CGAATCCCGA CGTTTGGGAC AGCGACAAAA GCCGCCAGCG CATGATGCAT
TCTGGTGAAG AAGGTATACG CTCCGTACAA ATAGCAGGTG CAGATCCTGA TTTAATGGCT
AATGCCGCTA AGTTCAACGT TGAACAAGGT GCGCACATCA TTGATATCAA TATGGGCTGC
CCAGCAAAGA AAGTGAATAA AAAATTTGCT GGTTCTGCGT TAATGCAAAG CCCCAGCTTA
GTAAAAGAGA TTTTACAAGC AGTGGTTGCT GCAGTAGATG TGCCAGTAAC GTTAAAGATA
CGCACAGGTT GGGAGCCTGA ACATCGTAAT GGTGTTGAAA TAGCCCAAAT TGCTGAAGAT
TGTGGCATTG TCTCGCTCGC CGTTCACGGC CGAACCAGAC AATGCATGTA CAAAGGCTTT
GCCGAGTACG ACACCATTAA AGCAATTAAA CAGAATGTCT CAATTCCTGT TGTCGCTAAC
GGGGACATCG ACACACCAGA GAAAGCCAAG TTTGTACTTG ACTACACTGG CGCCGATGCC
CTGATGATAG GAAGAGGTGC ACAAGGACGG CCTTGGATTT TTAAAGAAAT CCTACATTAT
CTGGAAACAG GTAAAAAGTT AGCGCCAATT AAGGCAGAAG AGCAACGCAG TGTGATGCTT
GAACACCTTA AGAAACTTTA TGACTTATAT GGCGAATACA AAGGTGTCCG ATTTGCTAGA
AAGCATGTCG GGTGGTACCT AAACCATGAG GAACAGCGCC AATTTCGTGC TGACTTCAAT
CGGCTTGAAA CCGCTGCCCA GCAACATTCC CTCGTAGAAT GTTATTTTGA TGAATTAGTT
TAG
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| Protein sequence | MQIGPYQLSN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPDVWD SDKSRQRMMH
SGEEGIRSVQ IAGADPDLMA NAAKFNVEQG AHIIDINMGC PAKKVNKKFA GSALMQSPSL
VKEILQAVVA AVDVPVTLKI RTGWEPEHRN GVEIAQIAED CGIVSLAVHG RTRQCMYKGF
AEYDTIKAIK QNVSIPVVAN GDIDTPEKAK FVLDYTGADA LMIGRGAQGR PWIFKEILHY
LETGKKLAPI KAEEQRSVML EHLKKLYDLY GEYKGVRFAR KHVGWYLNHE EQRQFRADFN
RLETAAQQHS LVECYFDELV
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