| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0266 |
|---|
| Symbol | |
|---|
| ID | 4278069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 293402 |
|---|
| End bp | 296545 |
|---|
| Gene Length | 3144 bp |
|---|
| Protein Length | 1047 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133020 |
|---|
| Product | heavy metal efflux pump, CzcA family protein |
|---|
| Protein accession | YP_748967 |
|---|
| Protein GI | 114561454 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.792977 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGCAA AAATTATCAG TGCTTCAATA AAGCAACGCG TTATGGTGTT GATACTCACG
GCCGTTATCG CGTTAGTGGG TTATCAAGCC ATGCGCATGA CCCCACTGGA CGCACTACCT
GATTTATCAG ACGTACAAGT TATTGTAAAA ACCTCTTACC CAGGCCAGGC ACCACAATTA
GTTGAAGATC AAATTACCTA TCCATTGTCA TCGGCCATGC TTGCCGTGCC AGGAGCCAAA
ACAGTACGTG GTTTTTCAAT GTTTGGTGAC TCGTTTGTGT ATGTCATTTT TGAAGATGGC
ACCGATATCT ATTGGGCGCG TTCACGGGTG CTTGAATATT TATCGCAAAC CCAAGATCAA
CTGCCTGACG GTGTCACGCC CAGTATTGGC CCTGATGCAT CGGGAGTGGG TTGGATTTTC
CAATATGCCT TAGTCGATCG TAACGGACAG TATGATTTAG CCCAACTGCG TTCATTACAA
GATTGGTTTT TAAAACTTGA ATTACAAAGT GTTGCCGGAG TATCCGAAGT TGCGACTGTT
GGCGGTATGG AACAAACATA TCAAGTGGTC GTCGACCCAC ATAAGCTAGC ACTGTATAAA
ATCGACTTAA TGACCATTAA AAACGCCTTA GATAACTCCA ATAGCTCGAC AGGCGGCTCG
GTGATTGAAA TGGCCGAAGC AGAATACATG ATCACTTCAA GTGGTTATCG CCAAACCATT
GCCGACTTTG CTGAAGTCCC ACTGGGCATT TTATCGGAAA CTGGTACGCC GGTATTAATG
AAAGACGTTG CCCAACTACG AACTGGCCCA GCGGCGCGTC GTGGTATTGC CGAACTCGAT
GGCAAAGGCG AAGTTGTCGG CGGTATTGTG GTGATGCGCT ATGGTGAAAA TGCTCTTGAA
ACCATTAATA ATGTTAAGCA AAAACTCAAG GAGATCAGTA ATGGATTACC TGATGGGGTC
GAATTAGTCA CCACTTATGA TCGCTCAGAG TTAATCTTAC GCTCAGTCGA TAACCTTAAG
CATAAAGTGT TAGAAGAAAT GCTGGTTGTC GGACTTATTT GCCTACTATT TTTACTGCAT
GCACGCTCAA CGTTAGTCGC GATAATCACC TTACCTATTT CGATTTTAGT CAGCTTTATC
GCCATGAATA TCATTGGTGT CAATGCCAAT ATTATGAGCT TAGGCGGTAT TGCCATTGCC
ATAGGAGCGG TAGTTGATGC GTCAATTGTA ATGGTCGAAA ATACCCATAA GCATTTGGAA
CATTATCGCC AAAAACACGG TAAAGCTCCA GAAGGAGATG ATCATTGGCA ACTCGTCAAA
GAGGCCTCAA TTGAGGTCGG CCCAGCTTTA TTTTTCAGCT TATTGATTAT AACCCTAAGC
TTTACACCGG TCTTTGCCCT TGAAGCGCAA GAAGGACGTT TATTTCACCC GCTAGCCTTT
ACCAAAACCT TCGCTATGGC GGCATCTGCC ATTTTAGCAA TTACCTTAAT TCCGGTGTTA
ATGGGTTATT TTGTGCGAGG TAAAATCCCT GATGAGCGTA AAAACCCCAT TAGCCGAGTA
TTAATTGCCA TATATCAACC ATTGTTAAAA TGGGTACTGC ATTTCCCTAA AATCACCATC
GGATTAGCCA TTATTGTGCT ATTCAGTGCT TACTACCCAT TAAGCCAAAT GGGCTCAGAG
TTTATGCCCA CCTTAGAAGA AGGTGACCTA CTTTACATGC CCACCACGCT ACCCAGTGTA
AGTGCAGGCA AAGCAGCAGA AATATTGCAG CAAACTGACC GACTGATAAA AACAGTACCC
GAAGTTAAAC GCGTGTTTGG CAAAGTGGGC CGAGCCATGA CAGCAACTGA CCCAGCGCCG
CTAACAATGC TAGAAACCAC CATCATGCTC AAACCGCCTG GCGAATGGCG TGAAGGCGTA
ACCTTAGAGA GCATTATTGC TGAACTGCAA AAAACCGTGC GTATACCAGG GATGACCAAT
GCTTGGGTGC AACCGATTAA AACCCGTATC GATATGTTAT CTACCGGCGT GAGAACGCCT
GTCGGCATAA AAATATCGGG CGCAAATGTT GAAGAACTAC AACGTATTGG TGCAGAAATA
GAAGCGGTAG TAAACCAATT ACCGGGAACT GAGTCGGCAT TTTCACAGCG TAGTAGCGGC
GGCCGTTATA TCGATATCAC ACCAGACCTT AAAAATGCCG CACGTTATGG CATGACCTTA
AAAGACATCC AAGATGTGGT AAAGATTGCC ATTGGTGGCA TGACAATAGG TGAATCAATA
CAAGGTCAAG AACGCTATCC AATCAATATC CGTTACCCGC GAGAGCTACG TGACAACATC
GAGAAGCTCA GAAATTTACC CGTTCTGACT AAAACGGGTA AGTACTTACC GTTAAGTTAT
TTAGCCGAAC TGAAAATTAC CGATGGTGCG CCTATGTTAG CCAGTGAAAA CGGTCGCCTT
ATCTCGTGGG TGTTTGTCGA TCTGAAAGAC ATTTCTATCG GTGAATATAT CGTTGCAGCA
GAAAAGGCAC TTAAACAACA AATTACCCTT CCTCCACGCT ACAACTATAG CTTTGCTGGG
CAATACGAGT ACATGCAACG CGTAGATGCC AAAATGAAAA TGGTGATCCC ATTAATGATC
GCGGTGATTT TTATGTTGCT GATGATGACT TTCAACTCAG TAATACAAGC ATCTGTAATC
ATGTTAAGTT TACCCTTTTC ATTGGTGGGT AGCGCATGGC TACTGTATGG ACTCGATTTT
AATTTTTCAG TTGCTGTATC TGTCGGCATG ATTGCCTTAG CTGGGGTCGC CGCTGAGTTT
GGCGTAGTGA TGCAGGTGTA CCTTAATAAT AGTATTAAGG CCTATAAAGA AGCCGACAAT
TACCACAGCA AAGCGGATTT AACGGCTGCA TTAATTGAAG GTGCAGTGAT GCGCATTCGC
CCTAAAGCCA TGACCGTCGC CACCATCTTT TTTGGTTTAC TACCGATCAT GTGGGGTAGC
GGTACGGGTA ATGAAGTGAT GCAAAAAATT GCTGCGCCTA TGGTCGGAGG AATGGTCACT
GCGCCGCTAC TGTCGCTATT TGTTATCCCA GCAATTTACT TGCTGATATA TGGCCGTAAG
TTACCCAAGC AATCATTATC TTAA
|
|---|
| Protein sequence | MLAKIISASI KQRVMVLILT AVIALVGYQA MRMTPLDALP DLSDVQVIVK TSYPGQAPQL
VEDQITYPLS SAMLAVPGAK TVRGFSMFGD SFVYVIFEDG TDIYWARSRV LEYLSQTQDQ
LPDGVTPSIG PDASGVGWIF QYALVDRNGQ YDLAQLRSLQ DWFLKLELQS VAGVSEVATV
GGMEQTYQVV VDPHKLALYK IDLMTIKNAL DNSNSSTGGS VIEMAEAEYM ITSSGYRQTI
ADFAEVPLGI LSETGTPVLM KDVAQLRTGP AARRGIAELD GKGEVVGGIV VMRYGENALE
TINNVKQKLK EISNGLPDGV ELVTTYDRSE LILRSVDNLK HKVLEEMLVV GLICLLFLLH
ARSTLVAIIT LPISILVSFI AMNIIGVNAN IMSLGGIAIA IGAVVDASIV MVENTHKHLE
HYRQKHGKAP EGDDHWQLVK EASIEVGPAL FFSLLIITLS FTPVFALEAQ EGRLFHPLAF
TKTFAMAASA ILAITLIPVL MGYFVRGKIP DERKNPISRV LIAIYQPLLK WVLHFPKITI
GLAIIVLFSA YYPLSQMGSE FMPTLEEGDL LYMPTTLPSV SAGKAAEILQ QTDRLIKTVP
EVKRVFGKVG RAMTATDPAP LTMLETTIML KPPGEWREGV TLESIIAELQ KTVRIPGMTN
AWVQPIKTRI DMLSTGVRTP VGIKISGANV EELQRIGAEI EAVVNQLPGT ESAFSQRSSG
GRYIDITPDL KNAARYGMTL KDIQDVVKIA IGGMTIGESI QGQERYPINI RYPRELRDNI
EKLRNLPVLT KTGKYLPLSY LAELKITDGA PMLASENGRL ISWVFVDLKD ISIGEYIVAA
EKALKQQITL PPRYNYSFAG QYEYMQRVDA KMKMVIPLMI AVIFMLLMMT FNSVIQASVI
MLSLPFSLVG SAWLLYGLDF NFSVAVSVGM IALAGVAAEF GVVMQVYLNN SIKAYKEADN
YHSKADLTAA LIEGAVMRIR PKAMTVATIF FGLLPIMWGS GTGNEVMQKI AAPMVGGMVT
APLLSLFVIP AIYLLIYGRK LPKQSLS
|
|---|
| |