| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0196 |
|---|
| Symbol | |
|---|
| ID | 4278122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 216592 |
|---|
| End bp | 217641 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638132950 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_748897 |
|---|
| Protein GI | 114561384 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAT CGATATTTTT ACTGTTGGCA GGCTTATTAA CTGGCGCCGC TCAAGCAGCC
GTTGGTAGCT ACCCAGTAGT GTTAGTGCAT GGCTTTCAAC CGGATAATTT ACAGAGTAAA
CCGACTGGTA CGCAGGTAGC TGACAATGGC TCAGAGTACT GGGCGCAATA TTGGCGTGAT
CGTGCTGATG CACGCATTGA TTGGCCATCG CAAGAGCGCA TTGCCAATAA AATAACCAGT
CAGTATGTAT GGCCTAAATT GCAACAGATG TCGCGAGAGG GGACATGTGC CAGCGGTTGT
GTATTTGTGA CCCATTCTAC TGGCGATTTA GTGATGCGTT ATATTATTGA TAACCAAGCG
CTATGGTTGC AAAACGCAGG TTTAAAGCCG CTTAATATTG TCGCCACATT TGACTTTTCT
GGCGCGGGTG GTGGGGTTGA ATTGGCTGAT TTGGCGGTTA ATGTCGCCAG TGGTTCAGGT
TTGATAGATG CAACATTGAA ACTAGCTGTG TCGTTATGGT TAGGAGAACT GCCGTCGTCA
TCCAATATTG GGGTATTGAA TGATTTACGC GTAAATACTG CACGCCAATT GGCAGCGTTT
CCTGAAAGTC GAGTACCACG TTTACGTTTT GCTGGGGCAG GGTCTGACTT TCTCGGTGTG
ACAGGGGCAT TTTTACCCGG CGAAGATGAT GGTGTTGTTG CCAGTCATTC TAGTTGTGGT
GCCGCGGCCG TCGGCAGTTA CAACAGTTGT TCGCGCAGTG TAGCATTTGA TGGCAAGCTC
ACCTCTACTA ATGGCCCTAG CGGATTTATG CCTTATCACT ACCCAATGTT GATGAGTGAA
GGCTATAGCC ATGGCGACAC TATTTTAAAT AGCGCTAAAG ATGAAGTAAC TTCTGCCAAT
AGTAGTGCCA ATTATCTCAA TGGCGATAAC TTGCAATTCA ACACCTATGA TGAAAAACGT
GGCTGGTGGA TATTTAGTTC ACGTTATAGA GTGGTTAATC ATTCGAATAA AACCAGTATG
TCAGCGCTTG TGTATCAAGC GGCTAACTAA
|
|---|
| Protein sequence | MTKSIFLLLA GLLTGAAQAA VGSYPVVLVH GFQPDNLQSK PTGTQVADNG SEYWAQYWRD
RADARIDWPS QERIANKITS QYVWPKLQQM SREGTCASGC VFVTHSTGDL VMRYIIDNQA
LWLQNAGLKP LNIVATFDFS GAGGGVELAD LAVNVASGSG LIDATLKLAV SLWLGELPSS
SNIGVLNDLR VNTARQLAAF PESRVPRLRF AGAGSDFLGV TGAFLPGEDD GVVASHSSCG
AAAVGSYNSC SRSVAFDGKL TSTNGPSGFM PYHYPMLMSE GYSHGDTILN SAKDEVTSAN
SSANYLNGDN LQFNTYDEKR GWWIFSSRYR VVNHSNKTSM SALVYQAAN
|
|---|
| |