| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0181 |
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| Symbol | |
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| ID | 4277583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 188731 |
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| End bp | 189984 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132931 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_748882 |
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| Protein GI | 114561369 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.113058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACAT TTTGGATATT TATTGCGCTT GTCGTACTCA TCGGCCTAAT CATGATTTGG
GTTCCACATT TTCGCCAACA AAAGCTGTTA CAAGCTGAAG AATCAGGTGT TCGTAGACAA
ACTAACCTTG AACTTTTTGC TGAACGCATC TCCATTCTTG AAAAGGAATT GCAAGACCAA
TTATTAGATC AGGTCGAATT CGAGGCATTA AAGAAAGAAT TAGAGATAAA TCTACTTCAG
GACATGAGCC AGAAGGGTGA TGACTCCCTT GATGTAGAAA TTAAATCAAA AACCGCATTA
TGGCCTGCTT TTATGACCCT GTGTCTATTA GCAGTATCTG GTTACTTATA TCAACACCTC
GGTGCTTACA ACGAATTAGC TAACCCACCA CAAGCAAGCA ATCCTCATCA AGGTATGGAT
CCTGCGCAAA TTATGTCGCA ACGGGTGCAG ATGATGGAAG CGAAGGTGCA GGCACAGCCA
GACGATAGCC AAGCTTGGTT TAGCCTTGGC CATGCTTATA TATCTGCCAA TCAATATGAT
AAAGCCATTG GCGCATTTGA TAAGGTAATG GAACTTGTCG GCACGCAAGC AGAACTCCTT
GGGCCTAAAG CAACCGCGCT ATACTATAAA GCGAATCAGC AGATGTCGCC GGCGATTCAA
GCTGTGATTG ATCAATCTTT AGCCTTAGAC CCACAAGACC CTTCTACACT ACTTCTTGTT
GGTATGGATG CATTCTTTAC CGCTGATTAC AAAAAAGCTA TCAATGCTTG GCAGATGATC
TTAGACAGCG ATCGTGATGA TGTTGATAGA ACAGCATTAA TGAATGCAAT TGAATCTGCA
AACATGCGCC TTAATGAAGG CTCGGCAATG CCTAATGGTG AGTCAACTCA AAAGCCAGCT
GTTACGAGCA ATGCTAATAC AGTCGCAATT GAAATTTCTA TTGCTCCAGA ATTAGCAGAC
AAAGTAGCTG ATACCGATAC TGTGTTTATT TTCGCACGAG CAACTCAAGG CCCAAAAGTA
CCGCTAGCAG CAACTAAAAT CAGTGCTAGC AGCTTACCTG TCACTGTCAC ACTAGATGAC
AGTACTTCTA TGGGTGGTGA TGTAAAACTG AGTTCTGTCG GAGAAGTAGA AATCATTGCA
GTACTGTCAA AAAATGGCAG CGTGAAACCA CAGTCTGGTG ACCTAAAGGG TAACATTAAA
GCCGTTAAGG TGGGTGGCAA TGCTACACTA ACTCTGGATA CCTTAGTGCA ATAG
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| Protein sequence | MTTFWIFIAL VVLIGLIMIW VPHFRQQKLL QAEESGVRRQ TNLELFAERI SILEKELQDQ
LLDQVEFEAL KKELEINLLQ DMSQKGDDSL DVEIKSKTAL WPAFMTLCLL AVSGYLYQHL
GAYNELANPP QASNPHQGMD PAQIMSQRVQ MMEAKVQAQP DDSQAWFSLG HAYISANQYD
KAIGAFDKVM ELVGTQAELL GPKATALYYK ANQQMSPAIQ AVIDQSLALD PQDPSTLLLV
GMDAFFTADY KKAINAWQMI LDSDRDDVDR TALMNAIESA NMRLNEGSAM PNGESTQKPA
VTSNANTVAI EISIAPELAD KVADTDTVFI FARATQGPKV PLAATKISAS SLPVTVTLDD
STSMGGDVKL SSVGEVEIIA VLSKNGSVKP QSGDLKGNIK AVKVGGNATL TLDTLVQ
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