| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0168 |
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| Symbol | secY |
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| ID | 4277238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 179715 |
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| End bp | 181055 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132918 |
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| Product | preprotein translocase subunit SecY |
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| Protein accession | YP_748869 |
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| Protein GI | 114561356 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000114541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAAAC CAGGACTTGA TTTAAAAAGC GCGAAAGGCG GTTTATCTGA ACTGAAAACT
CGTCTTCTGT TCGTGATTGG TGCGATTATC GTCTTTAGAG CCGGTTCGTT CGTGCCAATT
CCTGGTATTG ACGCAGCTGT ATTGGCAGAG CTATTTGCTC AGCAAAAAGA TACCATCCTT
GGCATGTTTA ACATGTTCTC GGGTGGTGCC TTAGAGCGTG CTTCTATCTT CGCATTGGGT
ATTATGCCGT ATATTTCGGC ATCTATCATA ATGCAGTTAT TGACTGTTGT GCATCCTGCA
CTCGCTGAAT TGAAAAAGGA AGGCGAATCA GGACGCAAGA AAATTAGTCA ATATACTAGA
TATGGCACAC TCGTGTTGGG TACGCTGCAA TCTGTCGGTA TTGCAACGGG TTTACCAAAT
CTGATGCCTG GTCTTGTGGC CAATCCCGGA TTTGGTTTCT ACTTCGTTGC AGTTGTGAGC
TTAGTAACAG GAACTATGTT CCTTATGTGG CTAGGTGAGC AAATTACCGA ACGTGGTATT
GGTAATGGTA TCTCGATTTT AATTTTCGCA GGTATTGTTG CTGGTCTACC ATCGGCCATC
GGCTCAACAG CCGAGCAGGC GCGTCAAGGT GACATGAATG TATTGGTACT ACTGTTGCTC
GCAGTGATTG TATTTGCTGT AACTTATTTA GTGGTATTTG TGGAACGTGG TCAACGTCGT
ATTGTCGTTA ATTACGCTAA ACGCCAACAA GGCCGTAAGG TTTTTGCAGC GCAAAGCACA
CATTTACCAT TAAAAATAAA TATGGCAGGT GTGATTCCAC CAATTTTTGC TTCCAGCATT
ATTTTGTTTC CAGGCACACT AGCTCAGTGG TTTGGTTCAA ATGAGTCCAT GTCATGGTTA
AGCGATTTCG CTTTAGCTGT GTCTCCAGGA CAACCGCTGT ACTCATTATT GTATGCGACA
GCAATCATCT TTTTCTGTTT CTTCTATACT GCGTTGGTAT TTAACCCTCG CGAAACAGCT
GATAACTTGA AAAAGAGTGG TGCATTCATT CCTGGGATCC GTCCCGGAGA ACAGACTTCG
CGTTACATTG ATAAAGTCAT GACACGTTTA ACCTTAGCGG GTGCGTTGTA CATTACCTTT
ATCTGCTTAA TTCCGGAGTT CATGTTAATT GCGTGGAAAG TACAGTTCTA TTTTGGCGGT
ACTTCACTAC TTATTATAGT AGTCGTAATC ATGGACTTCA TGGCTCAGGT TCAGACCCAT
ATGATGTCAC ATCAGTATGA GTCTGTGATG AAGAAAGCCA ATCTTGTTAA CAAAGCGAAT
TTAGATCGTT TTGGTAAATA A
|
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| Protein sequence | MAKPGLDLKS AKGGLSELKT RLLFVIGAII VFRAGSFVPI PGIDAAVLAE LFAQQKDTIL
GMFNMFSGGA LERASIFALG IMPYISASII MQLLTVVHPA LAELKKEGES GRKKISQYTR
YGTLVLGTLQ SVGIATGLPN LMPGLVANPG FGFYFVAVVS LVTGTMFLMW LGEQITERGI
GNGISILIFA GIVAGLPSAI GSTAEQARQG DMNVLVLLLL AVIVFAVTYL VVFVERGQRR
IVVNYAKRQQ GRKVFAAQST HLPLKINMAG VIPPIFASSI ILFPGTLAQW FGSNESMSWL
SDFALAVSPG QPLYSLLYAT AIIFFCFFYT ALVFNPRETA DNLKKSGAFI PGIRPGEQTS
RYIDKVMTRL TLAGALYITF ICLIPEFMLI AWKVQFYFGG TSLLIIVVVI MDFMAQVQTH
MMSHQYESVM KKANLVNKAN LDRFGK
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