Gene Sfri_0149 details

Gene Information

• Locus tag: Sfri_0149
• Symbol: rplD
• ID: 4277814
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 171552
• End bp: 172157
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638132899
• Product: 50S ribosomal protein L4
• Protein accession: YP_748850
• Protein GI: 114561337
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000510494
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATTGG TATTGAAAGA CGCCCAGAGC GCTCTTGAAG TTTCCGAAAC TACCTTCGGC 
CGTGACTTTA ACGAGGCATT GGTTCATCAG GTAGTTGTAG CATATGCTGC AAACGCGCGT 
CAGGGCACTC GTGCTCAAAA GACTCGTGCG GAAGTAACTG GCTCAGGCAA AAAGCCTTGG 
CGCCAGAAAG GCACAGGCCG CGCTCGTGCC GGTAGTGTTA AAGGCCCAAT CTGGCGTGGC 
GGTGGCGTAA CATTCGCTGC TAAAACACAA GATCACAGCC AAAAAGTTAA CAAGAAGATG 
TACCGTGGTG CTCTAAAGAG CATATTCTCT GAATTGGTAC GTCAAGAACG TCTAGTTGTT 
GTTGAATCGT TTGGTGTTGA AGCTCCTAAA ACTAAAGAGC TGAAAGCTAA ATTAAAAGCA 
ATGAACTTAG AAGATGTTCT AATTGTTACA GCTGAAGTTG ATGAGAATTT ATTCTTAGCA 
GCTCGCAACT TATACAAAGT TGACGTGCGT GACGTAGCGG GTCTTGACCC AGTTAGTCTA 
ATTGCGTTCA ACACTGTTCT TGTTACTGCT GATGCAGTGA AGCAAATCGA GGAGATGCTA 
GCATGA 

 

Protein sequence

MELVLKDAQS ALEVSETTFG RDFNEALVHQ VVVAYAANAR QGTRAQKTRA EVTGSGKKPW 
RQKGTGRARA GSVKGPIWRG GGVTFAAKTQ DHSQKVNKKM YRGALKSIFS ELVRQERLVV 
VESFGVEAPK TKELKAKLKA MNLEDVLIVT AEVDENLFLA ARNLYKVDVR DVAGLDPVSL 
IAFNTVLVTA DAVKQIEEML A