Gene Sfri_0148 details

Gene Information

• Locus tag: Sfri_0148
• Symbol: rplC
• ID: 4277813
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 170896
• End bp: 171534
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638132898
• Product: 50S ribosomal protein L3
• Protein accession: YP_748849
• Protein GI: 114561336
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000000284118
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTATCG GTCTTATTGG TCGTAAAGTG GGTATGACTC GCATCTTCAC TGAAGATGGT 
ACGTCAATCC CTGTAACAGT AATCGAGATT GCAGGCAACC GTGTTACTCA AGTGAAAACT 
TTAGAAACTG ACGGTTATCG TGCACTTCAA GTGACTACTG GTACCAAAAA AGCCAATCGC 
ATCACTAAAG CAGAAGCAGG TCACTTTGCC AAGGGCGGCG TAGAAGCCGG TCGTGGTTTG 
TGGGAAATGC GTTTAGCAGA TGGTGAAGGC GAAGGCATTG AAGTTGGTGC TGAAATTAAT 
GTTGATATTT TCGCTGATAC AGTGAAAGTT GATGTTACTG GTCAATCAAA AGGTAAAGGT 
TTCCAAGGCG GCGTTAAGCG TTGGAACTTC CGTACTCAAG ATATGACTCA CGGTAACTCT 
TTGGCACACC GTTCGAATGG TTCTATCGGT CAGAACCAAA CGCCTGGTCG TGTATTCAAA 
GGCAAGAAAA TGTCAGGCCA TATGGGTGCT GAGCAAGTAA CAACTCAAAA TCTACACGTA 
GTACGTGTTG ATGCAGAGCG TAACTTGTTA TTAGTACGCG GCGCAGTTCC AGGCGCTACC 
AATGGTGACT TGATTATCAA GCCAGCAGTT AAAGCTTAA 

 

Protein sequence

MAIGLIGRKV GMTRIFTEDG TSIPVTVIEI AGNRVTQVKT LETDGYRALQ VTTGTKKANR 
ITKAEAGHFA KGGVEAGRGL WEMRLADGEG EGIEVGAEIN VDIFADTVKV DVTGQSKGKG 
FQGGVKRWNF RTQDMTHGNS LAHRSNGSIG QNQTPGRVFK GKKMSGHMGA EQVTTQNLHV 
VRVDAERNLL LVRGAVPGAT NGDLIIKPAV KA