| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0139 |
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| Symbol | rplJ |
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| ID | 4277121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 156173 |
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| End bp | 156673 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638132889 |
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| Product | 50S ribosomal protein L10 |
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| Protein accession | YP_748840 |
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| Protein GI | 114561327 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0244] Ribosomal protein L10 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000054937 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCATTAA GACTCGAAGA CAAACAGGCA ATTGTTGCTG AAGTCAACGA AGCTGCCAAA
GGTGCACTTT CTGCAGTTGT TGCCGATTCA CGTGGCGTAA CTGTAGGTGC TATGACCGGT
CTGCGTAAAG CTGCTCGCGA AAATGGTGTG TTTGTACGTG TAGTACGTAA CACTCTTGCT
CGTCGTGCAG TTCAAGGTAC AGCTTTTGAG TGCCTAGCAG AAACGTTCAC TGGCCCAACT
TTAATAGCTT TCTCTAACGA GCATCCAGGT GCTGCAGCGC GTCTTTTAAA AGACTTCGCT
AAGGGACAAG CAAAATTTGA AGTTAAAGGT GCAGCTTTCG AAGGGATGTT TATCCCTGCA
GCTGATATTG ATCGTTTAGC GAAACTACCA ACATACGAAG AAGCACTAGC TCAGTTGATG
ATGACTATGA AAGAAGCATC TGCTGGCAAG TTCGTTCGTA CATTGGCCGC CCTTCGCGAT
CAAAAACAAG ACGCCGCTTA A
|
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| Protein sequence | MALRLEDKQA IVAEVNEAAK GALSAVVADS RGVTVGAMTG LRKAARENGV FVRVVRNTLA
RRAVQGTAFE CLAETFTGPT LIAFSNEHPG AAARLLKDFA KGQAKFEVKG AAFEGMFIPA
ADIDRLAKLP TYEEALAQLM MTMKEASAGK FVRTLAALRD QKQDAA
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